Harmonization of gene/protein annotations: towards a gold standard MEDLINE.
David CamposSérgio MatosIan LewinJosé Luís OliveiraDietrich Rebholz-SchuhmannPublished in: Bioinform. (2012)
Keyphrases
- gold standard
- gene ontology
- biomedical literature
- protein protein interactions
- protein function
- mechanical turk
- biological entities
- protein interaction
- protein protein interaction networks
- semi automatic
- microarray
- sequence alignment
- ground truth
- cellular processes
- gene prediction
- homo sapiens
- text mining
- interaction networks
- regulatory networks
- gene ontology terms
- signaling pathways
- controlled vocabulary
- gene expression
- computational methods
- saccharomyces cerevisiae
- biological knowledge
- genomic sequences
- nucleotide sequences
- semantic annotation
- high throughput
- manual segmentation
- gene function
- amino acid sequences
- protein complexes
- biological processes
- functional modules
- molecular biology
- computational approaches
- metadata
- automatic extraction
- high quality
- gene expression data
- semantic similarity
- protein sequences
- genome scale
- dna binding
- protein structure
- drug design
- amino acids
- biological data
- gene networks
- keywords
- network topology
- comparative genomics
- medline abstracts
- dna sequences
- gene regulatory networks
- mass spectrometry