Algorithm engineering for optimal alignment of protein structure distance matrices.

Inken Wohlers Rumen Andonov Gunnar W. Klau

Published in: Optim. Lett. (2011)

Keyphrases

optimal solution
dynamic programming
protein structure alignment
distance matrix
search space
protein structure
np hard
worst case
euclidean distance
distance metric
minimum distance
high accuracy
distance measure
distance function
suffix tree