Detailed protein sequence alignment based on Spectral Similarity Score (SSS).
Kshitiz GuptaDina ThomasS. V. VidyaKareenhalli V. VenkateshS. RamakumarPublished in: BMC Bioinform. (2005)
Keyphrases
- protein sequences
- similarity scores
- multiple sequence alignment
- multiple alignment
- sequence alignment
- multiple sequence alignments
- computational biology
- pairwise
- amino acids
- remote homology detection
- protein structure
- similarity measure
- protein classification
- secondary structure
- biological sequences
- protein function
- protein folding
- similarity measurement
- sequence analysis
- protein structure prediction
- structural motifs
- psi blast
- protein secondary structure
- protein structural
- amino acid sequences
- similarity function
- weighted sum
- experimentally determined
- physico chemical
- objective function
- amino acid composition
- solvent accessibility