From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.
Jin-Dong KimTomoko OhtaKanae OdaJun'ichi TsujiiPublished in: APBC (2008)
Keyphrases
- biomedical literature
- text mining
- knowledge acquisition
- gene function
- medical literature
- medline abstracts
- scientific literature
- text documents
- protein protein interactions
- automatic extraction
- annotated corpus
- gene ontology terms
- expert systems
- machine learning
- natural language processing
- knowledge discovery
- text classification
- information retrieval
- domain experts
- named entities
- metadata
- topic models
- knowledge base
- keywords
- data mining
- data analysis
- textual information
- knowledge representation
- information extraction
- controlled vocabulary
- gene ontology
- manually annotated
- knowledge sources
- domain ontology
- search engine
- visual features