Nucleotide sequence alignment using sparse coding and belief propagation.
Aminmohammad RoozgardNafise BarzigarShuang WangXiaoqian JiangLucila Ohno-MachadoSamuel ChengPublished in: EMBC (2013)
Keyphrases
- sequence alignment
- sparse coding
- belief propagation
- pairwise
- graphical models
- natural images
- markov random field
- sparse representation
- message passing
- image classification
- linear combination
- stereo matching
- graph cuts
- approximate inference
- dynamic programming
- generative model
- image representation
- higher order
- unsupervised learning
- binding sites
- dna sequences
- feature space
- markov networks
- protein sequences
- image patches
- energy function
- multiscale
- amino acids
- loopy belief propagation
- image features
- semi supervised
- high dimensional
- computer vision
- high quality
- free energy