A partition function algorithm for nucleic acid secondary structure including pseudoknots.

Robert M. Dirks Niles A. Pierce

Published in: J. Comput. Chem. (2003)

Keyphrases

rna secondary structure prediction
secondary structure
objective function
dynamic programming
learning algorithm
similarity measure
optimal solution
feature space
em algorithm
energy function
image matching
upper and lower bounds
loopy belief propagation
multiple sequence alignment