Niles A. Pierce

Publication Activity (10 Years)

Years Active: 2000-2011
Publications (10 Years): 0

Publications

Joseph N. Zadeh, Brian R. Wolfe, Niles A. Pierce
Nucleic acid sequence design via efficient ensemble defect optimization. J. Comput. Chem. 32 (3) (2011)
Joseph N. Zadeh, Conrad Steenberg, Justin S. Bois, Brian R. Wolfe, Marshall B. Pierce, Asif R. Khan, Robert M. Dirks, Niles A. Pierce
NUPACK: Analysis and design of nucleic acid systems. J. Comput. Chem. 32 (1) (2011)
Robert M. Dirks, Justin S. Bois, Joseph M. Schaeffer, Erik Winfree, Niles A. Pierce
Thermodynamic Analysis of Interacting Nucleic Acid Strands. SIAM Rev. 49 (1) (2007)
Jong-Shik Shin, Niles A. Pierce
Nanoscale Molecular Transport by Synthetic DNA Machines. Nanotechnology: Science and Computation (2006)
Robert M. Dirks, Niles A. Pierce
An algorithm for computing nucleic acid base-pairing probabilities including pseudoknots. J. Comput. Chem. 25 (10) (2004)
Robert M. Dirks, Niles A. Pierce
A partition function algorithm for nucleic acid secondary structure including pseudoknots. J. Comput. Chem. 24 (13) (2003)
D. Benjamin Gordon, Geoffrey K. Hom, Stephen L. Mayo, Niles A. Pierce
Exact rotamer optimization for protein design. J. Comput. Chem. 24 (2) (2003)
Niles A. Pierce, Jan A. Spriet, J. Desmet, Stephen L. Mayo
Conformational splitting: A more powerful criterion for dead-end elimination. J. Comput. Chem. 21 (11) (2000)
Niles A. Pierce, Michael B. Giles
Adjoint Recovery of Superconvergent Functionals from PDE Approximations. SIAM Rev. 42 (2) (2000)