RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
Xiaoyu ChenTimothy R. HughesQuaid MorrisPublished in: ISMB/ECCB (Supplement of Bioinformatics) (2007)
Keyphrases
- transcription factors
- transcription factor binding sites
- search algorithm
- dna binding
- binding sites
- chip seq
- dna sequences
- gene expression
- microarray
- cis regulatory
- transcriptional regulation
- component analysis
- genome wide
- computational biology
- motif discovery
- gene regulation
- systems biology
- regulatory networks
- regulatory elements
- co occurrence
- highly correlated
- sequence data
- statistical tests
- human genome
- gene expression data
- data mining
- natural language processing
- high throughput
- saccharomyces cerevisiae
- signaling pathways