Fast protein fragment similarity scoring using a Binet-Cauchy kernel.
Frédéric GuyonPierre TufféryPublished in: Bioinform. (2014)
Keyphrases
- similarity function
- protein structure alignment
- similarity measure
- kernel function
- sequence similarity
- random projections
- amino acids
- protein classification
- histogram intersection
- component analysis
- protein sequences
- semantic similarity
- similarity metric
- distance metric
- euclidean distance
- distance function
- kernel machines
- string kernels
- evolutionary programming
- structural similarities
- distance measure
- scoring model
- sequence alignment
- mass spectra
- amino acid sequences
- protein folding
- kernel methods
- feature space