WFAsic: A High-Performance ASIC Accelerator for DNA Sequence Alignment on a RISC-V SoC.
Abbas HaghiLluc AlvarezJordi FrontJuan Miguel De Haro RuizRoger FiguerasMax DoblasSantiago Marco-SolaMiquel MoretóPublished in: ICPP (2023)
Keyphrases
- sequence alignment
- low power consumption
- binding sites
- application specific
- field programmable gate array
- application specific integrated circuits
- low power
- hardware architecture
- single chip
- sequence databases
- hardware implementation
- dna sequences
- embedded systems
- comparative genomics
- smith waterman
- compute intensive
- gene expression
- low cost
- general purpose
- protein sequences
- phylogenetic analysis
- sequence data
- pairwise
- power consumption
- integrated circuit
- dynamic programming
- biological sequences
- high speed
- multiple sequence alignment
- gpu accelerated
- parallel computing
- amino acids
- general purpose processors
- multiple alignment
- transcription factors
- parallel implementation
- real time
- sequence analysis
- computing systems
- design methodology
- protein structure
- instruction set
- sample size