Manifold similarity search of DNA sequences with reconfigurable hardware.
Thinh Ngoc TranSurin KittitornkunShigenori TomiyamaPublished in: FPGA (2006)
Keyphrases
- similarity search
- dna sequences
- reconfigurable hardware
- high dimensional
- low cost
- hardware software
- metric space
- low dimensional
- similarity measure
- hardware implementation
- distance function
- high dimensional data
- field programmable gate array
- r tree
- knn
- query processing
- image processing
- binding sites
- motif discovery
- feature space
- biological sequences
- functional units
- input data
- databases
- embedded systems
- neural network