GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.
Noël Malod-DogninNatasa PrzuljPublished in: Bioinform. (2014)
Keyphrases
- protein structure alignment
- sequence alignment
- multiple sequence alignment
- similarity measure
- multiple sequence alignments
- contact map
- protein structure
- chemical compounds
- structural features
- protein sequences
- protein function
- smith waterman
- remote homology detection
- experimentally determined
- sequence similarity
- molecular dynamics
- amino acid sequences
- similarity measurement
- maximum clique
- similarity metric
- protein protein interactions
- computational methods
- euclidean distance
- distance measure