Zhiming Dai

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 12

Top Topics

Top Venues

Briefings Bioinform.

Database J. Biol. Databases Curation

Publications

Shenshen Bu, Yujie Song, Taiji Li, Zhiming Dai
Dynamic Knowledge Prompt for Chest X-ray Report Generation. LREC/COLING (2024)
Hegang Chen, Yuyin Lu, Zhiming Dai, Yuedong Yang, Qing Li, Yanghui Rao
Comprehensive single-cell RNA-seq analysis using deep interpretable generative modeling guided by biological hierarchy knowledge. Briefings Bioinform. 25 (4) (2024)
Weichao Ding, Fei Luo, Chunhua Gu, Zhiming Dai, Haifeng Lu
A Multiagent Meta-Based Task Offloading Strategy for Mobile-Edge Computing. IEEE Trans. Cogn. Dev. Syst. 16 (1) (2024)
Yuefan Lin, Zixiang Pan, Yuansong Zeng, Yuedong Yang, Zhiming Dai
Detecting novel cell type in single-cell chromatin accessibility data via open-set domain adaptation. Briefings Bioinform. 25 (5) (2024)
Siqi Xiao, Zhiming Dai
CSIFNet: Deep multimodal network based on cellular spatial information fusion for survival prediction. BIBM (2023)
Zhiming Dai
Transcription Factor-target Relationships Complicated by Knockout Analysis. ICBBT (2023)
Guishan Zhang, Ye Luo, Xianhua Dai, Zhiming Dai
Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities. Briefings Bioinform. 24 (6) (2023)
Shenshen Bu, Taiji Li, Zhiming Dai
Enhancing Medical Report Generation in Multi-Slice Fusion Scenarios. BIBM (2023)
Jiahao Zheng, Yuedong Yang, Zhiming Dai
Subgraph extraction and graph representation learning for single cell Hi-C imputation and clustering. Briefings Bioinform. 25 (1) (2023)
Haitao Yu, Zhiming Dai
SANPolyA: a deep learning method for identifying Poly(A) signals. Bioinform. 36 (8) (2020)
Yuanyan Xiong, Xiaowei Xie, Yanzhi Wang, Wenbin Ma, Puping Liang, Songyang Zhou, Zhiming Dai
pgRNAFinder: a web-based tool to design distance independent paired-gRNA. Bioinform. 33 (22) (2017)
Xiaowei Xie, Wenbin Ma, Songyang Zhou, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong
CCSI: a database providing chromatin-chromatin spatial interaction information. Database J. Biol. Databases Curation 2016 (2016)
Zhenhua Luo, Zhiming Dai, Xiaowei Xie, Xuyang Feng, Dan Liu, Songyang Zhou, Yuanyan Xiong
TeloPIN: a database of telomeric proteins interaction network in mammalian cells. Database J. Biol. Databases Curation 2015 (2015)
Qingyan Li, Shuabin Lian, Zhiming Dai, Qian Xiang, Xianhua Dai
BGDB: a database of bivalent genes. Database J. Biol. Databases Curation 2013 (2013)
Zhiming Dai, Xianhua Dai
Antisense transcription is coupled to nucleosome occupancy in sense promoters. Bioinform. 28 (21) (2012)
Zhiming Dai, Xianhua Dai, Qian Xiang
Genome-wide DNA sequence polymorphisms facilitate nucleosome positioning in yeast. Bioinform. 27 (13) (2011)
Zhiming Dai, Xianhua Dai
Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions. PLoS Comput. Biol. 7 (11) (2011)
Jihua Feng, Xianhua Dai, Zhiming Dai, Qian Xiang, Jiang Wang, Yangyang Deng, Caisheng He
A simulation model for nucleosome distribution in the yeast genome based on integrated cross-platform positioning datasets. Math. Comput. Model. 52 (11-12) (2010)
Jiang Wang, Xianhua Dai, Qian Xiang, Yangyang Deng, Jihua Feng, Zhiming Dai, Caisheng He
Insights into the combinatorial effects of histone modifications in yeast using association rule mining. BIC-TA (2010)
Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng
Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation. Genom. Proteom. Bioinform. 7 (4) (2009)
Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng, Yangyang Deng, Jiang Wang, Caisheng He
Transcriptional interaction-assisted identification of dynamic nucleosome positioning. BMC Bioinform. 10 (S-1) (2009)
Qian Xiang, Xianhua Dai, Yangyang Deng, Caisheng He, Jiang Wang, Jihua Feng, Zhiming Dai
Missing value imputation for microarray gene expression data using histone acetylation information. BMC Bioinform. 9 (2008)
Zhiming Dai, Xianhua Dai, Jiang Wang
Identifying Transcription Factor Binding Sites Based on a Neural Network. ISNN (2) (2006)