Zexian Liu

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 34

Top Topics

Gradient Method

Unconstrained Optimization

Approximately Optimal

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Numer. Algorithms

J. Optim. Theory Appl.

Publications

Taiyong Song, Zexian Liu
An Efficient Subspace Minimization Conjugate Gradient Method for Solving Nonlinear Monotone Equations with Convex Constraints. Axioms 13 (3) (2024)
Zexian Liu, Yan Ni, Hongwei Liu, Wumei Sun
A New Subspace Minimization Conjugate Gradient Method for Unconstrained Minimization. J. Optim. Theory Appl. 200 (2) (2024)
Hongwei Liu, Ting Wang, Zexian Liu
A nonmonotone accelerated proximal gradient method with variable stepsize strategy for nonsmooth and nonconvex minimization problems. J. Glob. Optim. 89 (4) (2024)
Taiyong Song, Zexian Liu
An efficient inertial subspace minimization CG algorithm with convergence rate analysis for constrained nonlinear monotone equations. J. Comput. Appl. Math. 446 (2024)
Zexian Liu, Panqin Wang, Qingfeng Zhang, Shihua Li, Yuxin Zhang, Yutong Guo, Chongchong Jia, Tian Shao, Lin Li, Han Cheng, Zhenlong Wang
iHypoxia: An Integrative Database of Protein Expression Dynamics in Response to Hypoxia in Animals. Genom. Proteom. Bioinform. 21 (2) (2023)
Kai Yu, Ye Wang, Yongqiang Zheng, Zekun Liu, Qingfeng Zhang, Siyu Wang, Qi Zhao, Xiaolong Zhang, Xiaoxing Li, Rui-Hua Xu, Zexian Liu
qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast. Nucleic Acids Res. 51 (D1) (2023)
Kai Yu, Zekun Liu, Haoyang Cheng, Shihua Li, Qingfeng Zhang, Jia Liu, Huai-Qiang Ju, Zhixiang Zuo, Qi Zhao, Shiyang Kang, Zexian Liu
dSCOPE: a software to detect sequences critical for liquid-liquid phase separation. Briefings Bioinform. 24 (1) (2023)
Wumei Sun, Hongwei Liu, Zexian Liu
A regularized limited memory subspace minimization conjugate gradient method for unconstrained optimization. Numer. Algorithms 94 (4) (2023)
Zexian Liu, Wangli Chu, Hongwei Liu
An efficient gradient method with approximately optimal stepsizes based on regularization models for unconstrained optimization. RAIRO Oper. Res. 56 (4) (2022)
Hongwei Liu, Ting Wang, Zexian Liu
Some modified fast iterative shrinkage thresholding algorithms with a new adaptive non-monotone stepsize strategy for nonsmooth and convex minimization problems. Comput. Optim. Appl. 83 (2) (2022)
Jing Liang, Zong-Wei Li, Cai-Tong Yue, Zhuo Hu, Han Cheng, Zexian Liu, Wei-Feng Guo
Multi-modal optimization to identify personalized biomarkers for disease prediction of individual patients with cancer. Briefings Bioinform. 23 (5) (2022)
Wumei Sun, Hongwei Liu, Zexian Liu
Several accelerated subspace minimization conjugate gradient methods based on regularization model and convergence rate analysis for nonconvex problems. Numer. Algorithms 91 (4) (2022)
Han Xue, Qingfeng Zhang, Panqin Wang, Bijin Cao, Chongchong Jia, Ben Cheng, Yuhua Shi, Wei-Feng Guo, Zhenlong Wang, Zexian Liu, Han Cheng
qPTMplants: an integrative database of quantitative post-translational modifications in plants. Nucleic Acids Res. 50 (D1) (2022)
Bo Liu, Qingfeng Zhang, Jingou Wang, Shumin Cao, Zhiyuan Zhou, Zexian Liu, Han Cheng
iCAV: an integrative database of cancer-associated viruses. Database J. Biol. Databases Curation 2021 (2021)
Ting Zhao, Hongwei Liu, Zexian Liu
New subspace minimization conjugate gradient methods based on regularization model for unconstrained optimization. Numer. Algorithms 87 (4) (2021)
Wumei Sun, Hongwei Liu, Zexian Liu
A Class of Accelerated Subspace Minimization Conjugate Gradient Methods. J. Optim. Theory Appl. 190 (3) (2021)
Qingfeng Zhang, Kai Yu, Shihua Li, Xiaolong Zhang, Qi Zhao, Xia Zhao, Zekun Liu, Han Cheng, Zexian Liu, Xiaoxing Li
gutMEGA: a database of the human gut MEtaGenome Atlas. Briefings Bioinform. 22 (3) (2021)
Panqin Wang, Qingfeng Zhang, Shihua Li, Ben Cheng, Han Xue, Zhen Wei, Tian Shao, Zexian Liu, Han Cheng, Zhenlong Wang
iCysMod: an integrative database for protein cysteine modifications in eukaryotes. Briefings Bioinform. 22 (5) (2021)
Qi Zhao, Yu Sun, Zekun Liu, Hongwan Zhang, Xingyang Li, Kaiyu Zhu, Zexian Liu, Jian Ren, Zhixiang Zuo
CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect. Briefings Bioinform. 21 (5) (2020)
Zexian Liu, Hongwei Liu, Yu-Hong Dai
An improved Dai-Kou conjugate gradient algorithm for unconstrained optimization. Comput. Optim. Appl. 75 (1) (2020)
Liya Zhu, Han Cheng, Guoqing Peng, Shuansuo Wang, Zhiguo Zhang, Erdong Ni, Xiangdong Fu, Chuxiong Zhuang, Zexian Liu, Hai Zhou
Ubiquitinome Profiling Reveals the Landscape of Ubiquitination Regulation in Rice Young Panicles. Genom. Proteom. Bioinform. 18 (3) (2020)
Xinliu Diao, Hongwei Liu, Zexian Liu
A new subspace minimization conjugate gradient method based on modified secant equation for unconstrained optimization. Comput. Appl. Math. 39 (4) (2020)
Kai Yu, Qingfeng Zhang, Zekun Liu, Yimeng Du, Xinjiao Gao, Qi Zhao, Han Cheng, Xiaoxing Li, Zexian Liu
Deep learning based prediction of reversible HAT/HDAC-specific lysine acetylation. Briefings Bioinform. 21 (5) (2020)
Ting Wang, Zexian Liu, Hongwei Liu
A new subspace minimization conjugate gradient method based on tensor model for unconstrained optimization. Int. J. Comput. Math. 96 (10) (2019)
Zexian Liu, Hongwei Liu
An Efficient Gradient Method with Approximately Optimal Stepsize Based on Tensor Model for Unconstrained Optimization. J. Optim. Theory Appl. 181 (2) (2019)
Kai Yu, Qingfeng Zhang, Zekun Liu, Qi Zhao, Xiaolong Zhang, Yan Wang, Zi-Xian Wang, Ying Jin, Xiaoxing Li, Zexian Liu, Rui-Hua Xu
qPhos: a database of protein phosphorylation dynamics in humans. Nucleic Acids Res. 47 (Database-Issue) (2019)
Yufei Li, Zexian Liu, Hongwei Liu
A subspace minimization conjugate gradient method based on conic model for unconstrained optimization. Comput. Appl. Math. 38 (1) (2019)
Xiao-Liang Dong, Zexian Liu, Hong-Wei Liu, Xiang-Li Li
An efficient adaptive three-term extension of the Hestenes-Stiefel conjugate gradient method. Optim. Methods Softw. 34 (3) (2019)
Hongwei Liu, Zexian Liu
An Efficient Barzilai-Borwein Conjugate Gradient Method for Unconstrained Optimization. J. Optim. Theory Appl. 180 (3) (2019)
Zexian Liu, Hongwei Liu, Xiping Wang
Accelerated augmented Lagrangian method for total variation minimization. Comput. Appl. Math. 38 (2) (2019)
Hongwei Liu, Zexian Liu, Xiaoliang Dong
A new adaptive Barzilai and Borwein method for unconstrained optimization. Optim. Lett. 12 (4) (2018)
Ming Li, Hongwei Liu, Zexian Liu
A new subspace minimization conjugate gradient method with nonmonotone line search for unconstrained optimization. Numer. Algorithms 79 (1) (2018)
Zexian Liu, Hongwei Liu
Several efficient gradient methods with approximate optimal stepsizes for large scale unconstrained optimization. J. Comput. Appl. Math. 328 (2018)
Zexian Liu, Hongwei Liu
An efficient gradient method with approximate optimal stepsize for large-scale unconstrained optimization. Numer. Algorithms 78 (1) (2018)
Zhengnan Huang, Lili Ma, Yongbo Wang, Zhicheng Pan, Jian Ren, Zexian Liu, Yu Xue
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle. Nucleic Acids Res. 43 (Database-Issue) (2015)
Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Jian Ren, Zexian Liu, Yu Xue
dbPSP: a curated database for protein phosphorylation sites in prokaryotes. Database J. Biol. Databases Curation 2015 (2015)
Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue
dbPPT: a comprehensive database of protein phosphorylation in plants. Database J. Biol. Databases Curation 2014 (2014)
Zexian Liu, Yongbo Wang, Tianshun Gao, Zhicheng Pan, Han Cheng, Qing Yang, Zhongyi Cheng, Anyuan Guo, Jian Ren, Yu Xue
CPLM: a database of protein lysine modifications. Nucleic Acids Res. 42 (Database-Issue) (2014)
Qi Zhao, Yubin Xie, Yueyuan Zheng, Shuai Jiang, Wenzhong Liu, Weiping Mu, Zexian Liu, Yong Zhao, Yu Xue, Jian Ren
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Yongbo Wang, Zexian Liu, Han Cheng, Tianshun Gao, Zhicheng Pan, Qing Yang, Anyuan Guo, Yu Xue
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. Nucleic Acids Res. 42 (Database-Issue) (2014)
Tianshun Gao, Zexian Liu, Yongbo Wang, Han Cheng, Qing Yang, Anyuan Guo, Jian Ren, Yu Xue
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. Nucleic Acids Res. 41 (Database-Issue) (2013)
Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. Briefings Bioinform. 14 (3) (2013)
Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen, Xiangjiao Yang, Xuebiao Yao, Jian Ren, Yu Xue
CPLA 1.0: an integrated database of protein lysine acetylation. Nucleic Acids Res. 39 (Database-Issue) (2011)
Jian Ren, Zexian Liu, Xinjiao Gao, Changjiang Jin, Mingliang Ye, Hanfa Zou, Longping Wen, Zhaolei Zhang, Yu Xue, Xuebiao Yao
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res. 38 (Database-Issue) (2010)