​
Login / Signup
Yushi Luan
ORCID
Publication Activity (10 Years)
Years Active: 2013-2024
Publications (10 Years): 24
Top Topics
Affinity Propagation
Deep Learning
Protein Interaction
Gene Selection
Top Venues
BMC Bioinform.
BIBM
Briefings Bioinform.
Comput. Biol. Medicine
</>
Publications
</>
Zhaowei Wang
,
Jun Meng
,
Qiguo Dai
,
Haibin Li
,
Shihao Xia
,
Ruirui Yang
,
Yushi Luan
DeepPepPI: A deep cross-dependent framework with information sharing mechanism for predicting plant peptide-protein interactions.
Expert Syst. Appl.
252 (2024)
Haibin Li
,
Jun Meng
,
Zhaowei Wang
,
Youwei Tang
,
Shihao Xia
,
Yu Wang
,
Zhaojing Qin
,
Yushi Luan
miPEPPred-FRL: A Novel Method for Predicting Plant MiRNA-Encoded Peptides Using Adaptive Feature Representation Learning.
J. Chem. Inf. Model.
64 (7) (2024)
Zhaowei Wang
,
Jun Meng
,
Haibin Li
,
Shihao Xia
,
Yu Wang
,
Yushi Luan
PAMPred: A hierarchical evolutionary ensemble framework for identifying plant antimicrobial peptides.
Comput. Biol. Medicine
166 (2023)
Siyuan Zhao
,
Jun Meng
,
Jael Sanyanda Wekesa
,
Yushi Luan
Identification of small open reading frames in plant lncRNA using class-imbalance learning.
Comput. Biol. Medicine
157 (2023)
Yu Wang
,
Jun Meng
,
Shihao Xia
,
Haibin Li
,
Zhaowei Wang
,
Yushi Luan
TGAAL: Combining Transformer-based GAN and active learning to identify the coding potential of sORFs in plant lncRNAs.
BIBM
(2023)
Shihao Xia
,
Jun Meng
,
Zhaowei Wang
,
Yu Wang
,
Haibin Li
,
Zhaojing Qin
,
Yushi Luan
A multi-granularity information-enhanced pre-training method for predicting the coding potential of sORFs in plant lncRNAs.
BIBM
(2023)
Siyuan Zhao
,
Jun Meng
,
Yushi Luan
Predicting the interactions between plant lncRNA-encoded peptide and protein using domain knowledge-based prototypical network.
BIBM
(2022)
Qiang Kang
,
Jun Meng
,
Chenglin Su
,
Yushi Luan
Mining plant endogenous target mimics from miRNA-lncRNA interactions based on dual-path parallel ensemble pruning method.
Briefings Bioinform.
23 (1) (2022)
Siyuan Zhao
,
Jun Meng
,
Qiang Kang
,
Yushi Luan
Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble Learning.
IEEE ACM Trans. Comput. Biol. Bioinform.
19 (5) (2022)
Qiang Kang
,
Jun Meng
,
Yushi Luan
RNAI-FRID: novel feature representation method with information enhancement and dimension reduction for RNA-RNA interaction.
Briefings Bioinform.
23 (3) (2022)
Zhicheng Wang
,
Yushi Luan
,
Xiaoxu Zhou
,
Jun Cui
,
Feishi Luan
,
Jun Meng
Optimized combination methods for exploring and verifying disease-resistant transcription factors in melon.
Briefings Bioinform.
22 (4) (2021)
Jun Meng
,
Qiang Kang
,
Zheng Chang
,
Yushi Luan
PlncRNA-HDeep: plant long noncoding RNA prediction using hybrid deep learning based on two encoding styles.
BMC Bioinform.
(3) (2021)
Jael Sanyanda Wekesa
,
Yushi Luan
,
Jun Meng
Predicting Protein Functions Based on Differential Co-expression and Neighborhood Analysis.
J. Comput. Biol.
28 (1) (2021)
Haoran Zhou
,
Jael Sanyanda Wekesa
,
Yushi Luan
,
Jun Meng
PRPI-SC: an ensemble deep learning model for predicting plant lncRNA-protein interactions.
BMC Bioinform.
(3) (2021)
Jael Sanyanda Wekesa
,
Yushi Luan
,
Jun Meng
LPI-DL: A recurrent deep learning model for plant lncRNA-protein interaction and function prediction with feature optimization.
BIBM
(2020)
Qiang Kang
,
Jun Meng
,
Jun Cui
,
Yushi Luan
,
Ming Chen
PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA-lncRNA interaction prediction.
Bioinform.
36 (10) (2020)
Jun Meng
,
Zheng Chang
,
Peng Zhang
,
Wenhao Shi
,
Yushi Luan
lncRNA-LSTM: Prediction of Plant Long Non-coding RNAs Using Long Short-Term Memory Based on p-nts Encoding.
ICIC (3)
(2019)
Haoran Zhou
,
Yushi Luan
,
Jael Sanyanda Wekesa
,
Jun Meng
Prediction of Plant lncRNA-Protein Interactions Using Sequence Information Based on Deep Learning.
ICIC (3)
(2019)
Jun Meng
,
Dingling Jiang
,
Zheng Chang
,
Yushi Luan
Prediction of LncRNA by Using Muitiple Feature Information Fusion and Feature Selection Technique.
ICIC (2)
(2018)
Jun Meng
,
Dingling Jiang
,
Jing Zhang
,
Yushi Luan
Ensemble classification for gene expression data based on parallel clustering.
Int. J. Data Min. Bioinform.
20 (3) (2018)
Jun Cui
,
Ning Jiang
,
Jun Meng
,
Yushi Luan
Genome-Wide Analysis of Response Regulator Genes in Solanum lycopersicum.
ISBRA
(2017)
Jun Meng
,
Jing Zhang
,
Yushi Luan
,
Xinyu He
,
Li-Shuang Li
,
Yuan-Feng Zhu
Parallel gene selection and dynamic ensemble pruning based on Affinity Propagation.
Comput. Biol. Medicine
87 (2017)
Jun Meng
,
Guan-Li Shi
,
Yushi Luan
Plant miRNA function prediction based on functional similarity network and transductive multi-label classification algorithm.
Neurocomputing
179 (2016)
Jun Meng
,
Han Hao
,
Yushi Luan
Classifier ensemble selection based on affinity propagation clustering.
J. Biomed. Informatics
60 (2016)
Jun Meng
,
Jing Zhang
,
Yushi Luan
Gene Selection Integrated with Biological Knowledge for Plant Stress Response Using Neighborhood System and Rough Set Theory.
IEEE ACM Trans. Comput. Biol. Bioinform.
12 (2) (2015)
Jun Meng
,
Dong Liu
,
Yushi Luan
Inferring plant microRNA functional similarity using a weighted protein-protein interaction network.
BMC Bioinform.
16 (2015)
Jun Meng
,
Dong Liu
,
Chao Sun
,
Yushi Luan
Prediction of plant pre-microRNAs and their microRNAs in genome-scale sequences using structure-sequence features and support vector machine.
BMC Bioinform.
15 (2014)
Jun Meng
,
Jing Zhang
,
Rui Li
,
Yushi Luan
Gene selection using rough set based on neighborhood for the analysis of plant stress response.
Appl. Soft Comput.
25 (2014)
Wanlu Wang
,
Xin Zhang
,
Jun Meng
,
Yushi Luan
Protein function prediction based on physiochemical properties and protein granularity.
GrC
(2013)