Yiannis N. Kaznessis

Publication Activity (10 Years)

Years Active: 2001-2018
Publications (10 Years): 3

Top Topics

Transformation Based Learning

Marginal Distributions

Maximum Entropy

Stochastic Models

Top Venues

BMC Syst. Biol.

Comput. Chem. Eng.

Publications

Michail Vlysidis, Yiannis N. Kaznessis
On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure. Entropy 20 (9) (2018)
Michail Vlysidis, Yiannis N. Kaznessis
Solving Stochastic Reaction Networks with Maximum Entropy Lagrange Multipliers. Entropy 20 (9) (2018)
Michail Vlysidis, Yiannis N. Kaznessis
A linearization method for probability moment equations. Comput. Chem. Eng. 112 (2018)
Konstantinos Biliouris, David Babson, Claudia Schmidt-Dannert, Yiannis N. Kaznessis
Stochastic simulations of a synthetic bacteria-yeast ecosystem. BMC Syst. Biol. 6 (2012)
Konstantinos Biliouris, Prodromos Daoutidis, Yiannis N. Kaznessis
Stochastic simulations of the tetracycline operon. BMC Syst. Biol. 5 (2011)
Marie-Nathalie Contou-Carrere, Vassilios Sotiropoulos, Yiannis N. Kaznessis, Prodromos Daoutidis
Model reduction of multi-scale chemical Langevin equations. Syst. Control. Lett. 60 (1) (2011)
Emma M. B. Weeding, Jason Houle, Yiannis N. Kaznessis
SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs. Briefings Bioinform. 11 (4) (2010)
Vassilios Sotiropoulos, Marie-Nathalie Contou-Carrere, Prodromos Daoutidis, Yiannis N. Kaznessis
Model Reduction of Multiscale Chemical Langevin Equations: A Numerical Case Study. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (3) (2009)
Dan S. Bolintineanu, Abdallah Sayyed-Ahmad, H. Ted Davis, Yiannis N. Kaznessis
Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore. PLoS Comput. Biol. 5 (1) (2009)
Yiannis N. Kaznessis, Vassilios Sotiropoulos, Anthony D. Hill, Jonathan R. Tomshine, Katherine Volzing, John Barrett, Emma M. B. Weeding
Multiscale Models for Synthetic Biology. BIOCOMP (2008)
Anthony D. Hill, Jonathan R. Tomshine, Emma M. B. Weeding, Vassilios Sotiropoulos, Yiannis N. Kaznessis
SynBioSS: the synthetic biology modeling suite. Bioinform. 24 (21) (2008)
Vassilios Sotiropoulos, Yiannis N. Kaznessis
Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes. BMC Syst. Biol. 1 (2007)
Yiannis N. Kaznessis
Models for synthetic biology. BMC Syst. Biol. 1 (2007)
Yuhua Duan, Boojala V. B. Reddy, Yiannis N. Kaznessis
Residue Conservation Information for Generating near-native Structures in Protein-protein Docking. J. Bioinform. Comput. Biol. 4 (4) (2006)
Howard M. Salis, Vassilios Sotiropoulos, Yiannis N. Kaznessis
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers. BMC Bioinform. 7 (2006)
Howard M. Salis, Yiannis N. Kaznessis
Numerical simulation of stochastic gene circuits. Comput. Chem. Eng. 29 (3) (2005)
Boojala V. B. Reddy, Yiannis N. Kaznessis
A Quantitative Analysis of Interfacial Amino Acid Conservation in Protein-protein Hetero Complexes. J. Bioinform. Comput. Biol. 3 (5) (2005)
Yiannis N. Kaznessis, Mark E. Snow, C. John Blankley
Prediction of blood-brain partitioning using Monte Carlo simulations of molecules in water. J. Comput. Aided Mol. Des. 15 (8) (2001)