Yassine Souilmi

Publication Activity (10 Years)

Years Active: 2014-2021
Publications (10 Years): 5

Top Topics

High Throughput

Efficient Compression

Top Venues

Briefings Bioinform.

Publications

Divon Lan, Raymond Tobler, Yassine Souilmi, Bastien Llamas
Genozip: a universal extensible genomic data compressor. Bioinform. 37 (16) (2021)
Adrien Oliva, Raymond Tobler, Alan Cooper, Bastien Llamas, Yassine Souilmi
Systematic benchmark of ancient DNA read mapping. Briefings Bioinform. 22 (5) (2021)
Divon Lan, Raymond Tobler, Yassine Souilmi, Bastien Llamas
genozip: a fast and efficient compression tool for VCF files. Bioinform. 36 (13) (2020)
Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes, Scott Hazelhurst, Hocine Bendou, Eugene de Beste, Phelelani T. Mpangase, Oussema Souiai, Mustafa Alghali, Long Yi, Brian D. O'Connor, Michael R. Crusoe, Don Armstrong, Shaun Aron, Fourie Joubert, Azza E. Ahmed, Mamana Mbiyavanga, Peter van Heusden, Lerato E. Magosi, Jennie Zermeno, Liudmila S. Mainzer, Faisal M. Fadlelmola, C. Victor Jongeneel, Nicola J. Mulder
Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics. BMC Bioinform. 19 (1) (2018)
Hatem Elshazly, Yassine Souilmi, Peter J. Tonellato, Dennis P. Wall, Mohamed Abouelhoda
MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. BMC Bioinform. 18 (1) (2017)
Yassine Souilmi, Jae-Yoon Jung, Alex Lancaster, Erik Gafni, Saaid Amzazi, Hassan Ghazal, Dennis P. Wall, Peter J. Tonellato
COSMOS: cloud enabled NGS analysis. BMC Bioinform. 16 (S-2) (2015)
Erik Gafni, Lovelace J. Luquette, Alex Lancaster, Jared B. Hawkins, Jae-Yoon Jung, Yassine Souilmi, Dennis P. Wall, Peter J. Tonellato
COSMOS: Python library for massively parallel workflows. Bioinform. 30 (20) (2014)