Xiaowo Wang

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 20

Top Topics

Machine Learning Models

Gene Expression

Microscopy Images

Top Venues

Briefings Bioinform.

Publications

Ziting Zhang, Wenxu Wu, Lei Wei, Xiaowo Wang
Discovering and Overcoming the Bias in Neoantigen Identification by Unified Machine Learning Models. RECOMB (2024)
Wenrui Li, Wei Zhang, Qinghao Zhang, Xuegong Zhang, Xiaowo Wang
Weakly-supervised causal discovery based on fuzzy knowledge and complex data complementarity. CoRR (2024)
Xuegong Zhang, Lei Wei, Rui Jiang, Xiaowo Wang, Jin Gu, Zhen Xie, Hairong Lv
Building digital life systems for future biology and medicine. Quant. Biol. 11 (3) (2023)
Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang
Correction to: DeSP: a systematic DNA storage error simulation pipeline. BMC Bioinform. 23 (1) (2022)
Wei Zhang, Hanwen Xu, Rong Qiao, Bixi Zhong, Xianglin Zhang, Jin Gu, Xuegong Zhang, Lei Wei, Xiaowo Wang
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data. Briefings Bioinform. 23 (1) (2022)
Lekang Yuan, Zhen Xie, Ye Wang, Xiaowo Wang
DeSP: a systematic DNA storage error simulation pipeline. BMC Bioinform. 23 (1) (2022)
Xianglin Zhang, Xiaodong Jia, Bixi Zhong, Lei Wei, Jiaqi Li, Wei Zhang, Huan Fang, Yanda Li, Yinying Lu, Xiaowo Wang
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA. Briefings Bioinform. 23 (4) (2022)
Tao Hu, Lei Wei, Shuailin Li, Tianrun Cheng, Xuegong Zhang, Xiaowo Wang
Single-cell Transcriptomes Reveal Characteristics of MicroRNAs in Gene Expression Noise Reduction. Genom. Proteom. Bioinform. 19 (3) (2021)
Jiaqi Li, Lei Wei, Xianglin Zhang, Wei Zhang, Haochen Wang, Bixi Zhong, Zhen Xie, Hairong Lv, Xiaowo Wang
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads. Briefings Bioinform. 22 (6) (2021)
Shengquan Chen, Qiao Liu, Xuejian Cui, Zhanying Feng, Chunquan Li, Xiaowo Wang, Xuegong Zhang, Yong Wang, Rui Jiang
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Wei Zhang, Lei Wei, Jiaqi Huang, Bixi Zhong, Jiaqi Li, Hanwen Xu, Shuying He, Yu Liu, Juhong Liu, Hairong Lv, Xiaowo Wang
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data. Bioinform. 37 (22) (2021)
Tao Hu, Shixiong Xu, Lei Wei, Xuegong Zhang, Xiaowo Wang
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images. Bioinform. 37 (2) (2021)
Lei Wei, Ye Yuan, Tao Hu, Shuailin Li, Tianrun Cheng, Jinzhi Lei, Zhen Xie, Michael Q. Zhang, Xiaowo Wang
Regulation by competition: a hidden layer of gene regulatory network. Quant. Biol. 7 (2) (2019)
Zhun Miao, Ke Deng, Xiaowo Wang, Xuegong Zhang
DEsingle for detecting three types of differential expression in single-cell RNA-seq data. Bioinform. 34 (18) (2018)
Zheng Wei, Wei Zhang, Huan Fang, Yanda Li, Xiaowo Wang
esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis. Bioinform. 34 (15) (2018)
Xiaowo Wang
Regulation by competing: A hidden layer of gene regulatory networks. CASE (2017)
Chao He, Guipeng Li, Mohamed Nadhir Djekidel, Yang Chen, Xiaowo Wang, Michael Q. Zhang
Advances in computational ChIA-PET data analysis. Quant. Biol. 4 (3) (2016)
Ye Yuan, Xinying Ren, Zhen Xie, Xiaowo Wang
A quantitative understanding of microRNA-mediated competing endogenous RNA regulation. Quant. Biol. 4 (1) (2016)
Chao He, Michael Q. Zhang, Xiaowo Wang
MICC: an R package for identifying chromatin interactions from ChIA-PET data. Bioinform. 31 (23) (2015)
Honglei Liu, Zheng Wei, Antonia Dominguez, Yanda Li, Xiaowo Wang, Lei S. Qi
CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation. Bioinform. 31 (22) (2015)
Honglei Liu, Yanda Li, Xiaowo Wang
OP-Synthetic: identification of optimal genetic manipulations for the overproduction of native and non-native metabolites. Quant. Biol. 2 (3) (2014)
Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang
DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinform. 26 (1) (2010)
Xiaowo Wang, Jin Gu, Michael Q. Zhang, Yanda Li
species. Bioinform. 24 (2) (2008)
Xiaowo Wang, Jing Zhang, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li
MicroRNA identification based on sequence and structure alignment. Bioinform. 21 (18) (2005)