Xiaoke Ma

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 73

Top Topics

Link Prediction

Gene Expression

Negative Matrix Factorization

Community Detection

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Knowl. Based Syst.

Publications

Zhaoyuan Cai, Xianghua Xie, Jingjing Deng, Zengfa Dou, Bo Tong, Xiaoke Ma
Image restoration with group sparse representation and low-rank group residual learning. IET Image Process. 18 (3) (2024)
Xiaoke Ma, Ying Su, Xingfu Zou
Joint Impact of Maturation Delay and Fear Effect on the Population Dynamics of a Predator-Prey System. SIAM J. Appl. Math. 84 (4) (2024)
Wenming Wu, Xiaoke Ma, Quan Wang, Maoguo Gong, Quanxue Gao
Learning deep representation and discriminative features for clustering of multi-layer networks. Neural Networks 170 (2024)
Haiyue Wang, Quan Wang, Qiguang Miao, Xiaoke Ma
Joint learning of data recovering and graph contrastive denoising for incomplete multi-view clustering. Inf. Fusion 104 (2024)
Haiyue Wang, Wensheng Zhang, Xiaoke Ma
Contrastive and adversarial regularized multi-level representation learning for incomplete multi-view clustering. Neural Networks 172 (2024)
Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma, Yichuan Wang
FedBoosting: Federated learning with gradient protected boosting for text recognition. Neurocomputing 569 (2024)
Haiyue Wang, Zaiyi Liu, Xiaoke Ma
Learning Consistency and Specificity of Cells From Single-Cell Multi-Omic Data. IEEE J. Biomed. Health Informatics 28 (5) (2024)
Yifei Yang, Xiaoke Ma
Graph Contrastive Learning for Clustering of Multi-Layer Networks. IEEE Trans. Big Data 10 (4) (2024)
Zhenxing Niu, Yuyao Sun, Haodong Ren, Haoxuan Ji, Quan Wang, Xiaoke Ma, Gang Hua, Rong Jin
Efficient LLM-Jailbreaking by Introducing Visual Modality. CoRR (2024)
He Li, Duo Jin, Xuejiao Li, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Deshuang Huang, Shaojie Qiao, Jaesoo Yoo
DMGF-Net: An Efficient Dynamic Multi-Graph Fusion Network for Traffic Prediction. ACM Trans. Knowl. Discov. Data 17 (7) (2023)
Xingping Xian, Tao Wu, Xiaoke Ma, Shaojie Qiao, Yabin Shao, Chao Wang, Lin Yuan, Yu Wu
Generative Graph Neural Networks for Link Prediction. CoRR (2023)
Dongyuan Li, Xiaoke Ma, Maoguo Gong
Joint Learning of Feature Extraction and Clustering for Large-Scale Temporal Networks. IEEE Trans. Cybern. 53 (3) (2023)
Linghao Chen, He Li, Wanyuan Zhang, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Ning Li, Jaesoo Yoo
AnomMAN: Detect anomalies on multi-view attributed networks. Inf. Sci. 628 (2023)
Xiaowei Gao, Yan Wang, Weimin Hou, Zaiyi Liu, Xiaoke Ma
Multi-View Clustering for Integration of Gene Expression and Methylation Data With Tensor Decomposition and Self-Representation Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (3) (2023)
Wentao Jia, Xiaoke Ma
Clustering of multi-layer networks with structural relations and conservation of features. Appl. Soft Comput. 140 (2023)
Wenming Wu, Maoguo Gong, Xiaoke Ma
Clustering of Multilayer Networks Using Joint Learning Algorithm With Orthogonality and Specificity of Features. IEEE Trans. Cybern. 53 (8) (2023)
Wenming Wu, Tao Yang, Xiaoke Ma, Wensheng Zhang, He Li, Jianbin Huang, Yanni Li, Jiangtao Cui
Learning specific and conserved features of multi-layer networks. Inf. Sci. 622 (2023)
Wenming Wu, Wensheng Zhang, Weimin Hou, Xiaoke Ma
Multi-View Clustering With Graph Learning for scRNA-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Hanchi Ren, Jingjing Deng, Xianghua Xie, Xiaoke Ma, Jianfeng Ma
Gradient Leakage Defense with Key-Lock Module for Federated Learning. CoRR (2023)
Tao Yang, Minghua Wang, Xiaoke Ma
Transfer Learning Classification Algorithm by Exploiting Multi-source Adaptation and Similarity of Omic Data. BIBM (2023)
Wenming Wu, Xiaoke Ma
Network-Based Structural Learning Nonnegative Matrix Factorization Algorithm for Clustering of scRNA-Seq Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Xiaoke Ma, Wei Zhao, Wenming Wu
Layer-Specific Modules Detection in Cancer Multi-Layer Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Xiaowei Gao, Xiaoke Ma, Wensheng Zhang, Jianbin Huang, He Li, Yanni Li, Jiangtao Cui
Multi-View Clustering With Self-Representation and Structural Constraint. IEEE Trans. Big Data 8 (4) (2022)
Jianbin Huang, Longji Huang, Meijuan Liu, He Li, Qinglin Tan, Xiaoke Ma, Jiangtao Cui, De-Shuang Huang
Deep Reinforcement Learning-based Trajectory Pricing on Ride-hailing Platforms. ACM Trans. Intell. Syst. Technol. 13 (3) (2022)
Xiaoke Ma, Peng Gang Sun, Maoguo Gong
An Integrative Framework of Heterogeneous Genomic Data for Cancer Dynamic Modules Based on Matrix Decomposition. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Ben-Hui Zhang, Xiaoke Ma
Multi-view clustering with constructed bipartite graph in embedding space. Knowl. Based Syst. 254 (2022)
Xiaoxiong Zhong, Xinghan Wang, Tingting Yang, Yuanyuan Yang, Yang Qin, Xiaoke Ma
POTAM: A Parallel Optimal Task Allocation Mechanism for Large-Scale Delay Sensitive Mobile Edge Computing. IEEE Trans. Commun. 70 (4) (2022)
Wenming Wu, Wensheng Zhang, Xiaoke Ma
Network-based integrative analysis of single-cell transcriptomic and epigenomic data for cell types. Briefings Bioinform. 23 (2) (2022)
Haiyue Wang, Xiaoke Ma
Learning deep features and topological structure of cells for clustering of scRNA-sequencing data. Briefings Bioinform. 23 (3) (2022)
Haiyue Wang, Wensheng Zhang, Xiaoke Ma
Clustering of noised and heterogeneous multi-view data with graph learning and projection decomposition. Knowl. Based Syst. 255 (2022)
Zengfa Dou, Xiaoke Ma, Xianghua Xie, Hui Liu, Chubing Guo
A hybrid method of detecting flame from video stream. IET Image Process. 16 (11) (2022)
He Li, Jianbin Huang, Hang Yuan, Jiangtao Cui, Xiaoke Ma, Shaojie Qiao, Xindong Wu
A Two-Phase Method to Balance the Result of Distributed Graph Repartitioning. IEEE Trans. Big Data 8 (6) (2022)
Zhihao Huang, Yan Wang, Xiaoke Ma
Clustering of Cancer Attributed Networks by Dynamically and Jointly Factorizing Multi-Layer Graphs. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (5) (2022)
Dongyuan Li, Shuyao Zhang, Xiaoke Ma
Dynamic Module Detection in Temporal Attributed Networks of Cancers. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (4) (2022)
Haiyue Wang, Xiaoke Ma
Learning discriminative and structural samples for rare cell types with deep generative model. Briefings Bioinform. 23 (5) (2022)
Xiaoke Ma, Shiyin Tan, Xianghua Xie, Xiaoxiong Zhong, Jingjing Deng
Joint multi-label learning and feature extraction for temporal link prediction. Pattern Recognit. 121 (2022)
Fei Song, Shiyin Tan, Zengfa Dou, Xiaogang Liu, Xiaoke Ma
Predicting combinations of drugs by exploiting graph embedding of heterogeneous networks. BMC Bioinform. 23 (1) (2022)
He Li, Hang Yuan, Jianbin Huang, Xiaoke Ma, Jiangtao Cui, Jaesoo Yoo
Edge Repartitioning via Structure-Aware Group Migration. IEEE Trans. Comput. Soc. Syst. 9 (3) (2022)
Fei Song, Xiaogang Liu, Xiaoke Ma
Transfer Learning for Gene Ranking across Cancers. BIBM (2021)
Changzhou Ma, Qiang Lin, Yong Lin, Xiaoke Ma
Identification of multi-layer networks community by fusing nonnegative matrix factorization and topological structural information. Knowl. Based Syst. 213 (2021)
He Li, Hang Yuan, Jianbin Huang, Jiangtao Cui, Xiaoke Ma, Senzhang Wang, Jaesoo Yoo, Philip S. Yu
Group Reassignment for Dynamic Edge Partitioning. IEEE Trans. Parallel Distributed Syst. 32 (10) (2021)
Xiaowei Gao, Xiaogang Liu, Xiaoke Ma
Multi-view Clustering for the Integration Analysis of Gene Expression and Methylation Data. BIBM (2021)
Wenming Wu, Zaiyi Liu, Xiaoke Ma
jSRC: a flexible and accurate joint learning algorithm for clustering of single-cell RNA-sequencing data. Briefings Bioinform. 22 (5) (2021)
Ben-Hui Zhang, Maoguo Gong, Jianbin Huang, Xiaoke Ma
Clustering Heterogeneous Information Network by Joint Graph Embedding and Nonnegative Matrix Factorization. ACM Trans. Knowl. Discov. Data 15 (4) (2021)
Yan Wang, Zuheng Xia, Jingjing Deng, Xianghua Xie, Maoguo Gong, Xiaoke Ma
TLGP: a flexible transfer learning algorithm for gene prioritization based on heterogeneous source domain. BMC Bioinform. (9) (2021)
Zhihao Huang, Zengfa Dou, Xiaoke Ma
Embedding regularized nonnegative matrix factorization for structural reduction in multi-layer networks. Appl. Soft Comput. 112 (2021)
Yan Wang, Xiaoke Ma
Joint nonnegative matrix factorization and network embedding for graph co-clustering. Neurocomputing 462 (2021)
Dongyuan Li, Qiang Lin, Xiaoke Ma
Identification of dynamic community in temporal network via joint learning graph representation and nonnegative matrix factorization. Neurocomputing 435 (2021)
Junyao Zhang, Xiaogang Liu, Xiaoke Ma
Temporal Link Prediction for Cancer Networks using Structural Consistency Regularized Non-negative Matrix Factorization. BIBM (2021)
Dongyuan Li, Xiaoxiong Zhong, Zengfa Dou, Maoguo Gong, Xiaoke Ma
Detecting dynamic community by fusing network embedding and nonnegative matrix factorization. Knowl. Based Syst. 221 (2021)
Xiaoke Ma, Ben-Hui Zhang, Changzhou Ma, Zhiyu Ma
Co-regularized nonnegative matrix factorization for evolving community detection in dynamic networks. Inf. Sci. 528 (2020)
Zhihao Huang, Xiaoxiong Zhong, Qiang Wang, Maoguo Gong, Xiaoke Ma
Detecting community in attributed networks by dynamically exploring node attributes and topological structure. Knowl. Based Syst. 196 (2020)
Shiyin Tan, Xiaoke Ma
SeHNE: Semi-supervised Heterogeneous Network Embedding for Drug Combination. BIBM (2020)
Wenming Wu, Xiaoke Ma
Joint learning dimension reduction and clustering of single-cell RNA-sequencing data. Bioinform. 36 (12) (2020)
Xiaoxiong Zhong, Xinghan Wang, Yuanyuan Yang, Yang Qin, Xiaoke Ma, Tingting Yang
A Parallel Optimal Task Allocation Mechanism for Large-Scale Mobile Edge Computing. CoRR (2020)
Xinghan Wang, Xiaoxiong Zhong, Yanbin Zheng, Xiaoke Ma, Tingting Yang, Genglin Zhang
A Task Allocation Framework for Large-Scale Mobile Edge Computing. GLOBECOM (2020)
Zijie Li, Xiaoke Ma
Discovering Cell Types by Integrating Single-cell RNA-sequencing and Protein Interaction Network. BIBM (2020)
Qiang Lin, Yong Lin, Qiang Yu, Xiaoke Ma
Clustering of Cancer Attributed Networks via Integration of Graph Embedding and Matrix Factorization. IEEE Access 8 (2020)
Xiaoke Ma, Di Dong, Quan Wang
Community Detection in Multi-Layer Networks Using Joint Nonnegative Matrix Factorization. IEEE Trans. Knowl. Data Eng. 31 (2) (2019)
Zuheng Xia, Xiaoke Ma
Transfer Learning for Gene Prioritization. BIBM (2019)
Xiaoke Ma, Penggang Sun, Zhong-Yuan Zhang
An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (6) (2019)
Dongyuan Li, Xiaoke Ma
Nonnegative Matrix Factorization for Dynamic Modules in Cancer Attribute Temporal Networks. BIBM (2019)
Xiaoke Ma, Qian Xie, Xian Kong
Improving KAZE Feature Matching Algorithm with Alternative Image Gray Method. CSAE (2018)
Xiaoke Ma, Wanxin Tang, Peizhuo Wang, Xingli Guo, Lin Gao
Extracting Stage-Specific and Dynamic Modules Through Analyzing Multiple Networks Associated with Cancer Progression. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Xiaoke Ma, Penggang Sun
Fusing heterogeneous genomic data to discover cancer progression related dynamic modules. BIBM (2018)
Xiaoke Ma, Penggang Sun, Guimin Qin
Identifying Condition-Specific Modules by Clustering Multiple Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (5) (2018)
Xiaoke Ma, Penggang Sun, Guimin Qin
Nonnegative matrix factorization algorithms for link prediction in temporal networks using graph communicability. Pattern Recognit. 71 (2017)
Xiaoke Ma, Liang Yu, Peizhuo Wang, Xiaofei Yang
Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes. Comput. Biol. Chem. 69 (2017)
Xiaoke Ma, Zaiyi Liu, Zhongyuan Zhang, Xiao-Tai Huang, Wanxin Tang
Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data. BMC Bioinform. 18 (1) (2017)
Xiaoke Ma, Di Dong
Evolutionary Nonnegative Matrix Factorization Algorithms for Community Detection in Dynamic Networks. IEEE Trans. Knowl. Data Eng. 29 (5) (2017)
Penggang Sun, Xiaoke Ma
Dominating communities for hierarchical control of complex networks. Inf. Sci. 414 (2017)
Liang Yu, Bingbo Wang, Xiaoke Ma, Lin Gao
The extraction of drug-disease correlations based on module distance in incomplete human interactome. BMC Syst. Biol. 10 (4) (2016)
Hui-Min Cheng, Yi-Zi Ning, Xiaoke Ma, Zhongyuan Zhang
Effectiveness of Rapid Rail Transit System in Beijing. CoRR (2016)
Xiaoke Ma, Long Gao, Georgios Karamanlidis, Peng Gao, Chi Fung Lee, Lorena Garcia-Menendez, Rong Tian, Kai Tan
Revealing Pathway Dynamics in Heart Diseases by Analyzing Multiple Differential Networks. PLoS Comput. Biol. 11 (6) (2015)
Xiaoke Ma, Long Gao, Kai Tan
Modeling disease progression using dynamics of pathway connectivity. Bioinform. 30 (16) (2014)
Xiaoke Ma, Lin Gao
Discovering protein complexes in protein interaction networks via exploring the weak ties effect. BMC Syst. Biol. 6 (S-1) (2012)
Xiaoke Ma, Lin Gao
Predicting protein complexes in protein interaction networks using a core-attachment algorithm based on graph communicability. Inf. Sci. 189 (2012)
Lidong Fu, Lin Gao, Xiaoke Ma
A centrality measure based on spectral optimization of modularity density. Sci. China Inf. Sci. 53 (9) (2010)