William J. Allen

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 11

Top Topics

Medical Image Data

Deformable Surface

Magnetic Resonance Imaging

Top Venues

J. Comput. Chem.

Int. J. Comput. Assist. Radiol. Surg.

J. Chem. Inf. Model.

Publications

Tiffany Huff, Austin Darrow, Joshua Medina, Erik S. Ferlanti, James D. Carson, John M. Fonner, Sal Tijerina, Stanley J. Watowich, William J. Allen
Scalable and Reproducible Virtual Screening through an API-Integrated Workflow. PEARC (2023)
Erik S. Ferlanti, William J. Allen, Ernesto A. B. F. Lima, Yinzhi Wang, John M. Fonner
Perspectives and Experiences Supporting Containers for Research Computing at the Texas Advanced Computing Center. SC Workshops (2023)
Lauren E. Prentis, Courtney D. Singleton, John D. Bickel, William J. Allen, Robert C. Rizzo
A molecular evolution algorithm for ligand design in DOCK. J. Comput. Chem. 43 (29) (2022)
Andrew Solis, William J. Allen, Erik Ferlanti
Containerizing Visualization Software: Experiences and Best Practices. PEARC (2022)
Jason E. Sanchez, Govinda B. Kc, Julian Franco, William J. Allen, Jesus David Garcia, Suman Sirimulla
BiasNet: A Model to Predict Ligand Bias Toward GPCR Signaling. J. Chem. Inf. Model. 61 (9) (2021)
Wenjing Zhang, Yuewen Ma, Jianmin Zheng, William J. Allen
Tetrahedral mesh deformation with positional constraints. Comput. Aided Geom. Des. 81 (2020)
Rajarajeswari Muthusivarajan, William J. Allen, Ashok D. Pehere, Konstantin V. Sokolov, David Fuentes
Role of alkylated residues in the tetrapeptide self-assembly - A molecular dynamics study. J. Comput. Chem. 41 (31) (2020)
William J. Allen, Refaat E. Gabr, Getaneh B. Tefera, Amol S. Pednekar, Matthew W. Vaughn, Ponnada A. Narayana
Platform for Automated Real-Time High Performance Analytics on Medical Image Data. IEEE J. Biomed. Health Informatics 22 (2) (2018)
William J. Allen, Brian C. Fochtman, Trent E. Balius, Robert C. Rizzo
design strategies for DOCK: Application to HIVgp41 and other therapeutic targets. J. Comput. Chem. 38 (30) (2017)
Refaat E. Gabr, Getaneh B. Tefera, William J. Allen, Amol S. Pednekar, Ponnada A. Narayana
Erratum to: GRAPE: a graphical pipeline environment for image analysis in adaptive magnetic resonance imaging. Int. J. Comput. Assist. Radiol. Surg. 12 (3) (2017)
Refaat E. Gabr, Getaneh B. Tefera, William J. Allen, Amol S. Pednekar, Ponnada A. Narayana
GRAPE: a graphical pipeline environment for image analysis in adaptive magnetic resonance imaging. Int. J. Comput. Assist. Radiol. Surg. 12 (3) (2017)
William J. Allen, Trent E. Balius, Sudipto Mukherjee, Scott R. Brozell, Demetri Moustakas, P. Therese Lang, David A. Case, Irwin D. Kuntz, Robert C. Rizzo
DOCK 6: Impact of new features and current docking performance. J. Comput. Chem. 36 (15) (2015)
William J. Allen, Robert C. Rizzo
Implementation of the Hungarian Algorithm to Account for Ligand Symmetry and Similarity in Structure-Based Design. J. Chem. Inf. Model. 54 (2) (2014)
Trent E. Balius, William J. Allen, Sudipto Mukherjee, Robert C. Rizzo
design: Application to HIVgp41. J. Comput. Chem. 34 (14) (2013)
Justin A. Lemkul, William J. Allen, David R. Bevan
Practical Considerations for Building GROMOS-Compatible Small-Molecule Topologies. J. Chem. Inf. Model. 50 (12) (2010)
William J. Allen, Justin A. Lemkul, David R. Bevan
GridMAT-MD: A grid-based membrane analysis tool for use with molecular dynamics. J. Comput. Chem. 30 (12) (2009)