Wataru Shinoda

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 5

Top Topics

Protein Sequences

Molecular Dynamics

Gradient Vector Flow

Physicochemical Properties

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

Comput. Phys. Commun.

Publications

Yusuke Miyazaki, Wataru Shinoda
pSPICA Force Field Extended for Proteins and Peptides. J. Chem. Inf. Model. 64 (2) (2024)
Mark Z. Griffiths, Wataru Shinoda
tSPICA: Temperature- and Pressure-Dependent Coarse-Grained Force Field for Organic Molecules. J. Chem. Inf. Model. 59 (9) (2019)
Huihui Liu, Susumu Okazaki, Wataru Shinoda
Heteroaryldihydropyrimidines Alter Capsid Assembly By Adjusting the Binding Affinity and Pattern of the Hepatitis B Virus Core Protein. J. Chem. Inf. Model. 59 (12) (2019)
Kazushi Fujimoto, Rajadeep Singh Payal, Tomonori Hattori, Wataru Shinoda, Masayuki Nakagaki, Shigeyoshi Sakaki, Susumu Okazaki
Development of dissociative force field for all-atomistic molecular dynamics calculation of fracture of polymers. J. Comput. Chem. 40 (29) (2019)
Soumya Lipsa Rath, Huihui Liu, Susumu Okazaki, Wataru Shinoda
Identification of Factors Promoting HBV Capsid Self-Assembly by Assembly-Promoting Antivirals. J. Chem. Inf. Model. 58 (2) (2018)
Takenobu Nakamura, Shuhei Kawamoto, Wataru Shinoda
Precise calculation of the local pressure tensor in Cartesian and spherical coordinates in LAMMPS. Comput. Phys. Commun. 190 (2015)
Keiko Shinoda, Wataru Shinoda, Masuhiro Mikami
Efficient free energy calculation of water across lipid membranes. J. Comput. Chem. 29 (12) (2008)
Wataru Shinoda, Masuhiro Mikami
Rigid-body dynamics in the isothermal-isobaric ensemble: A test on the accuracy and computational efficiency. J. Comput. Chem. 24 (8) (2003)