Tommi Jaakkola

Publication Activity (10 Years)

Years Active: 2021-2023
Publications (10 Years): 15

Top Topics

Low False Positive Rate

Multiple Scales

Probabilistic Modeling

Hierarchical Structure

Top Venues

Publications

Xiang Fu, Albert Musaelian, Anders Johansson, Tommi Jaakkola, Boris Kozinsky
Learning Interatomic Potentials at Multiple Scales. CoRR (2023)
Gabriele Corso, Hannes Stärk, Bowen Jing, Regina Barzilay, Tommi Jaakkola
DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking. CoRR (2022)
Bowen Jing, Gabriele Corso, Renato Berlinghieri, Tommi Jaakkola
Subspace Diffusion Generative Models. ECCV (23) (2022)
Adam Fisch, Tal Schuster, Tommi Jaakkola, Regina Barzilay
Conformal Prediction Sets with Limited False Positives. ICML (2022)
Adam Fisch, Tommi Jaakkola, Regina Barzilay
Calibrated Selective Classification. CoRR (2022)
Hannes Stärk, Octavian-Eugen Ganea, Lagnajit Pattanaik, Regina Barzilay, Tommi Jaakkola
EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction. CoRR (2022)
Yilun Xu, Hao He, Tianxiao Shen, Tommi Jaakkola
Controlling Directions Orthogonal to a Classifier. CoRR (2022)
Brian L. Trippe, Jason Yim, Doug Tischer, David Baker, Tamara Broderick, Regina Barzilay, Tommi Jaakkola
Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem. CoRR (2022)
Hannes Stärk, Octavian Ganea, Lagnajit Pattanaik, Regina Barzilay, Tommi Jaakkola
EquiBind: Geometric Deep Learning for Drug Binding Structure Prediction. ICML (2022)
Wengong Jin, Regina Barzilay, Tommi Jaakkola
Antibody-Antigen Docking and Design via Hierarchical Equivariant Refinement. CoRR (2022)
Bracha Laufer-Goldshtein, Adam Fisch, Regina Barzilay, Tommi Jaakkola
Efficiently Controlling Multiple Risks with Pareto Testing. CoRR (2022)
Wengong Jin, Regina Barzilay, Tommi Jaakkola
Antibody-Antigen Docking and Design via Hierarchical Structure Refinement. ICML (2022)
Adam Fisch, Tal Schuster, Tommi Jaakkola, Regina Barzilay
Conformal Prediction Sets with Limited False Positives. CoRR (2022)
Yilun Xu, Tommi Jaakkola
Learning Representations that Support Robust Transfer of Predictors. CoRR (2021)
Octavian-Eugen Ganea, Xinyuan Huang, Charlotte Bunne, Yatao Bian, Regina Barzilay, Tommi Jaakkola, Andreas Krause
Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking. CoRR (2021)