Tomasz Lipniacki

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 8

Top Topics

Decision Making

Statistical Models

Experimental Data

Top Venues

PLoS Comput. Biol.

BMC Syst. Biol.

Commun. Nonlinear Sci. Numer. Simul.

Publications

Ali Emadi, Tomasz Lipniacki, Andre Levchenko, Ali Abdi
A Decision Making Model Where the Cell Exhibits Maximum Detection Probability: Statistical Signal Detection Theory and Molecular Experimental Data. CISS (2023)
Pawel Nalecz-Jawecki, Paolo Armando Gagliardi, Marek Kochanczyk, Coralie Dessauges, Olivier Pertz, Tomasz Lipniacki
The MAPK/ERK channel capacity exceeds 6 bit/hour. PLoS Comput. Biol. 19 (5) (2023)
Malay Banerjee, Tomasz Lipniacki, Alberto d'Onofrio, Vitaly Volpert
Epidemic model with strain-dependent transmission rate. Commun. Nonlinear Sci. Numer. Simul. 114 (2022)
Robert C. Mines, Tomasz Lipniacki, Xiling Shen
Slow nucleosome dynamics set the transcriptional speed limit and induce RNA polymerase II traffic jams and bursts. PLoS Comput. Biol. 18 (2) (2022)
Iman Habibi, Raymond Cheong, Tomasz Lipniacki, Andre Levchenko, Effat S. Emamian, Ali Abdi
Computation and measurement of cell decision making errors using single cell data. PLoS Comput. Biol. 13 (4) (2017)
Marek Kochanczyk, William S. Hlavacek, Tomasz Lipniacki
SPATKIN: a simulator for rule-based modeling of biomolecular site dynamics on surfaces. Bioinform. 33 (22) (2017)
Beata Hat, Marek Kochanczyk, Marta N. Bogdal, Tomasz Lipniacki
Feedbacks, Bifurcations, and Cell Fate Decision-Making in the p53 System. PLoS Comput. Biol. 12 (2) (2016)
Karol Nienaltowski, Michal Wlodarczyk, Tomasz Lipniacki, Michal Komorowski
Clustering reveals limits of parameter identifiability in multi-parameter models of biochemical dynamics. BMC Syst. Biol. 9 (2015)
Elaine Crooks, Bogdan Kazmierczak, Tomasz Lipniacki
A Spatially Extended Model of Kinase-Receptor Interaction. SIAM J. Appl. Math. 73 (1) (2013)
Marta N. Bogdal, Beata Hat, Marek Kochanczyk, Tomasz Lipniacki
Levels of pro-apoptotic regulator Bad and anti-apoptotic regulator Bcl-xL determine the type of the apoptotic logic gate. BMC Syst. Biol. 7 (2013)
Beata Hat, Bogdan Kazmierczak, Tomasz Lipniacki
B Cell Activation Triggered by the Formation of the Small Receptor Cluster: A Computational Study. PLoS Comput. Biol. 7 (10) (2011)
Krzysztof Fujarewicz, Marek Kimmel, Tomasz Lipniacki, Andrzej Swierniak
Adjoint Systems for Models of Cell Signaling Pathways and their Application to Parameter Fitting. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (3) (2007)
Tomasz Lipniacki, Krzysztof Puszynski, Pawel Paszek, Allan R. Brasier, Marek Kimmel
B signaling. BMC Bioinform. 8 (2007)
Tomasz Lipniacki
Statics of Rigid Units Chain. Int. J. Bifurc. Chaos 11 (3) (2001)