Simone Zaccaria

Publication Activity (10 Years)

Years Active: 2013-2022
Publications (10 Years): 12

Top Topics

Minimax Probability Machine

Top Venues

J. Comput. Biol.

Publications

Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir
Parsimonious Clone Tree Integration in cancer. Algorithms Mol. Biol. 17 (1) (2022)
Zubair Lalani, Gillian Chu, Silas Hsu, Shaw Kagawa, Michael Xiang, Simone Zaccaria, Mohammed El-Kebir
CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data. PLoS Comput. Biol. 18 (10) (2022)
Palash Sashittal, Simone Zaccaria, Mohammed El-Kebir
Parsimonious Clone Tree Reconciliation in Cancer. WABI (2021)
Matthew A. Myers, Simone Zaccaria, Benjamin J. Raphael
Identifying tumor clones in sparse single-cell mutation data. Bioinform. 36 (Supplement-1) (2020)
Gryte Satas, Simone Zaccaria, Geoffrey Mon, Benjamin J. Raphael
Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses. RECOMB (2020)
Stefano Beretta, Murray Patterson, Simone Zaccaria, Gianluca Della Vedova, Paola Bonizzoni
HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads. BMC Bioinform. 19 (1) (2018)
Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael
Phylogenetic Copy-Number Factorization of Multiple Tumor Samples. J. Comput. Biol. 25 (7) (2018)
Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael
The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data. RECOMB (2017)
Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira
Complexity and algorithms for copy-number evolution problems. Algorithms Mol. Biol. 12 (1) (2017)
Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria
On the Minimum Error Correction Problem for Haplotype Assembly in Diploid and Polyploid Genomes. J. Comput. Biol. 23 (9) (2016)
Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira
Copy-Number Evolution Problems: Complexity and Algorithms. WABI (2016)
Yuri Pirola, Simone Zaccaria, Riccardo Dondi, Gunnar W. Klau, Nadia Pisanti, Paola Bonizzoni
HapCol: accurate and memory-efficient haplotype assembly from long reads. Bioinform. 32 (11) (2016)
Paola Bonizzoni, Riccardo Dondi, Gunnar W. Klau, Yuri Pirola, Nadia Pisanti, Simone Zaccaria
On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem. CPM (2015)
Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye
On the inversion-indel distance. BMC Bioinform. 14 (S-15) (2013)