Shuangge Ma

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 52

Top Topics

Abdominal Aortic Aneurysm

False Discovery Rate

Interaction Analysis

Gene Expression

Top Venues

Comput. Stat. Data Anal.

Briefings Bioinform.

J. Multivar. Anal.

Publications

Xing Qin, Jianhua Hu, Shuangge Ma, Mengyun Wu
Estimation of multiple networks with common structures in heterogeneous subgroups. J. Multivar. Anal. 202 (2024)
Xinkai Sun, Sanguo Zhang, Shuangge Ma
Prediction Consistency Regularization for Learning with Noise Labels Based on Contrastive Clustering. Entropy 26 (4) (2024)
Weijuan Liang, Qingzhao Zhang, Shuangge Ma
Hierarchical false discovery rate control for high-dimensional survival analysis with interactions. Comput. Stat. Data Anal. 192 (2024)
Tong Wang, Jian Huang, Shuangge Ma
Penalized Generative Variable Selection. CoRR (2024)
Shuangge Ma
Editorial. Briefings Bioinform. 24 (4) (2023)
Weijuan Liang, Qingzhao Zhang, Shuangge Ma
Locally sparse quantile estimation for a partially functional interaction model. Comput. Stat. Data Anal. 186 (2023)
Shunqin Zhang, Sanguo Zhang, Huangdi Yi, Shuangge Ma
Aligned deep neural network for integrative analysis with high-dimensional input. J. Biomed. Informatics 144 (2023)
Han Yan, Sanguo Zhang, Shuangge Ma
Hierarchy-assisted gene expression regulatory network analysis. Stat. Anal. Data Min. 16 (3) (2023)
Feifei Wang, Dongzuo Liang, Yang Li, Shuangge Ma
Prior information-assisted integrative analysis of multiple datasets. Bioinform. 39 (8) (2023)
Shuangge Ma, Martina Mittlböck, F. Javier Rubio, Catherine C. Liu
special issue on BIOSTATISTICS. Comput. Stat. Data Anal. 181 (2023)
Wei Xiong, Yaxian Chen, Shuangge Ma
Unified model-free interaction screening via CV-entropy filter. Comput. Stat. Data Anal. 180 (2023)
Yang Li, Dongzuo Liang, Shuangge Ma, Chenjin Ma
Spatio-temporally smoothed deep survival neural network. J. Biomed. Informatics 137 (2023)
Rui Ren, Kuangnan Fang, Qingzhao Zhang, Shuangge Ma
FunctanSNP: an R package for functional analysis of dense SNP data (with interactions). Bioinform. 39 (12) (2023)
Fei Zhou, Jie Ren, Shuangge Ma, Cen Wu
The Bayesian regularized quantile varying coefficient model. Comput. Stat. Data Anal. 187 (2023)
Xiao Zhang, Xingjie Shi, Yiming Liu, Xu Liu, Shuangge Ma
A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data. J. Comput. Graph. Stat. 32 (3) (2023)
Xiaoyan Wang, Hongduo Liu, Shuangge Ma
GEInfo: an R package for gene-environment interaction analysis incorporating prior information. Bioinform. 38 (11) (2022)
Yang Li, Shaodong Xu, Shuangge Ma, Mengyun Wu
Network-based cancer heterogeneity analysis incorporating multi-view of prior information. Bioinform. 38 (10) (2022)
Mengque Liu, Xia Zou, Jiyin Chen, Shuangge Ma
Comparative Analysis of Social Support in Online Health Communities Using a Word Co-Occurrence Network Analysis Approach. Entropy 24 (2) (2022)
Chenjin Ma, Mengyun Wu, Shuangge Ma
Analysis of cancer omics data: a selective review of statistical techniques. Briefings Bioinform. 23 (2) (2022)
Kuangnan Fang, Yuanxing Chen, Shuangge Ma, Qingzhao Zhang
Biclustering analysis of functionals via penalized fusion. J. Multivar. Anal. 189 (2022)
Jiamin Liu, Shuangge Ma, Wangli Xu, Liping Zhu
A generalized Wilcoxon-Mann-Whitney type test for multivariate data through pairwise distance. J. Multivar. Anal. 190 (2022)
Kuangnan Fang, Rui Ren, Qingzhao Zhang, Shuangge Ma
iSFun: an R package for integrative dimension reduction analysis. Bioinform. 38 (11) (2022)
Cunjie Lin, Nan Qiao, Wenli Zhang, Yang Li, Shuangge Ma
Default risk prediction and feature extraction using a penalized deep neural network. Stat. Comput. 32 (5) (2022)
Mengque Liu, Xinyan Fan, Shuangge Ma
A Linguistic Analysis of News Coverage of E-Healthcare in China with a Heterogeneous Graphical Model. Entropy 24 (11) (2022)
Mengque Liu, Qingzhao Zhang, Shuangge Ma
A tree-based gene-environment interaction analysis with rare features. Stat. Anal. Data Min. 15 (5) (2022)
Jiping Wang, Hongmin Liang, Qingzhao Zhang, Shuangge Ma
Replicability in cancer omics data analysis: measures and empirical explorations. Briefings Bioinform. 23 (5) (2022)
Xiaochen Zhang, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang
Subgroup analysis for high-dimensional functional regression. J. Multivar. Anal. 192 (2022)
Mengyun Wu, Xing Qin, Shuangge Ma
GEInter: an R package for robust gene-environment interaction analysis. Bioinform. 37 (20) (2021)
Weijuan Liang, Shuangge Ma, Cunjie Lin
Marginal false discovery rate for a penalized transformation survival model. Comput. Stat. Data Anal. 160 (2021)
Xinyan Fan, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang
Conditional score matching for high-dimensional partial graphical models. Comput. Stat. Data Anal. 153 (2021)
Mingyang Ren, Sanguo Zhang, Qingzhao Zhang, Shuangge Ma
HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis. Bioinform. 37 (18) (2021)
Qingzhao Zhang, Shuangge Ma, Yuan Huang
Promote sign consistency in the joint estimation of precision matrices. Comput. Stat. Data Anal. 159 (2021)
Mengyun Wu, Huangdi Yi, Shuangge Ma
Vertical integration methods for gene expression data analysis. Briefings Bioinform. 22 (3) (2021)
Sneha Jadhav, Shuangge Ma
An association test for functional data based on Kendall's Tau. J. Multivar. Anal. 184 (2021)
Mengque Liu, Qingzhao Zhang, Kuangnan Fang, Shuangge Ma
Structured analysis of the high-dimensional FMR model. Comput. Stat. Data Anal. 144 (2020)
Sebastian J. Teran Hidalgo, Mengyun Wu, Shuangge Ma
NCutYX: a package for clustering analysis of multilayer omics data. Bioinform. 36 (6) (2020)
Hao Mei, Yaqing Xu, Jiping Wang, Shuangge Ma
Evaluation of Survival Outcomes of Endovascular Versus Open Aortic Repair for Abdominal Aortic Aneurysms with a Big Data Approach. Entropy 22 (12) (2020)
Shengmei He, Shuangge Ma, Wangli Xu
A modified mean-variance feature-screening procedure for ultrahigh-dimensional discriminant analysis. Comput. Stat. Data Anal. 137 (2019)
Mengyun Wu, Shuangge Ma
Robust genetic interaction analysis. Briefings Bioinform. 20 (2) (2019)
Kuangnan Fang, Xinyan Fan, Qingzhao Zhang, Shuangge Ma
Integrative sparse principal component analysis. J. Multivar. Anal. 166 (2018)
Cen Wu, Qingzhao Zhang, Yu Jiang, Shuangge Ma
Robust network-based analysis of the associations between (epi)genetic measurements. J. Multivar. Anal. 168 (2018)
Xingjie Shi, Yuan Huang, Jian Huang, Shuangge Ma
A Forward and Backward Stagewise algorithm for nonconvex loss functions with adaptive Lasso. Comput. Stat. Data Anal. 124 (2018)
Tao Yu, Jialiang Li, Shuangge Ma
Accounting for clinical covariates and interactions in ranking genomic markers using ROC. Commun. Stat. Simul. Comput. 46 (5) (2017)
Jin Liu, Xiang Wan, Shuangge Ma, Can Yang
EPS: an empirical Bayes approach to integrating pleiotropy and tissue-specific information for prioritizing risk genes. Bioinform. 32 (12) (2016)
Yang Li, Yichen Qin, Limin Wang, Jiaxu Chen, Shuangge Ma
Grouped Variable Selection Using Area under the ROC with Imbalanced Data. Commun. Stat. Simul. Comput. 45 (4) (2016)
Lei Qin, Shuangge Ma, Jung-Chen Lin, Ben-Chang Shia
Lasso Regression Based on Empirical Mode Decomposition. Commun. Stat. Simul. Comput. 45 (4) (2016)
Kuangnan Fang, Xiaoyan Wang, Ben-Chang Shia, Shuangge Ma
Identification of proportionality structure with two-part models using penalization. Comput. Stat. Data Anal. 99 (2016)
Xiaonan Hu, Wei Zhang, Sanguo Zhang, Shuangge Ma, Qizhai Li
-values with applications to genetic association studies. Bioinform. 32 (18) (2016)
Xingjie Shi, Huangdi Yi, Shuangge Ma
Measures for the degree of overlap of gene signatures and applications to TCGA. Briefings Bioinform. 16 (5) (2015)
Xingjie Shi, Qing Zhao, Jian Huang, Yang Xie, Shuangge Ma
Deciphering the associations between gene expression and copy number alteration using a sparse double Laplacian shrinkage approach. Bioinform. 31 (24) (2015)
Cen Wu, Shuangge Ma
A selective review of robust variable selection with applications in bioinformatics. Briefings Bioinform. 16 (5) (2015)
Qing Zhao, Xingjie Shi, Yang Xie, Jian Huang, Ben-Chang Shia, Shuangge Ma
Combining multidimensional genomic measurements for predicting cancer prognosis: observations from TCGA. Briefings Bioinform. 16 (2) (2015)
Xingjie Shi, Shihao Shen, Jin Liu, Jian Huang, Yong Zhou, Shuangge Ma
Similarity of markers identified from cancer gene expression studies: observations from GEO. Briefings Bioinform. 15 (5) (2014)
Shuangge Ma, Ying Dai, Jian Huang, Yang Xie
Identification of breast cancer prognosis markers via integrative analysis. Comput. Stat. Data Anal. 56 (9) (2012)
Rui Song, Jian Huang, Shuangge Ma
Integrative prescreening in analysis of multiple cancer genomic studies. BMC Bioinform. 13 (2012)
Tao Yu, Jialiang Li, Shuangge Ma
Adjusting confounders in ranking biomarkers: a model-based ROC approach. Briefings Bioinform. 13 (5) (2012)
Ben-Chang Shia, Jianping Zhu, Kuangnan Fang, Shuangge Ma
Fuzzy Canonical Discriminant Analysis: Theory and Practice. Commun. Stat. Simul. Comput. 40 (10) (2011)
Shuangge Ma, Ying Dai
Principal component analysis based methods in bioinformatics studies. Briefings Bioinform. 12 (6) (2011)
Shuangge Ma, Xiao Song
Ranking prognosis markers in cancer genomic studies. Briefings Bioinform. 12 (1) (2011)
Shuangge Ma, Michael R. Kosorok
Detection of gene pathways with predictive power for breast cancer prognosis. BMC Bioinform. 11 (2010)
Shuangge Ma, Mingyu Shi, Yang Li, Danhui Yi, Ben-Chang Shia
Incorporating gene co-expression network in identification of cancer prognosis markers. BMC Bioinform. 11 (2010)
Shuangge Ma, Yawei Zhang, Jian Huang, Xuesong Han, Theodore Holford, Qing Lan, Nathaniel Rothman, Peter Boyle, Tongzhang Zheng
Identification of non-Hodgkin's lymphoma prognosis signatures using the CTGDR method. Bioinform. 26 (1) (2010)
Shuangge Ma, Jian Huang, Mingyu Shi, Yang Li, Ben-Chang Shia
Semiparametric prognosis models in genomic studies. Briefings Bioinform. 11 (4) (2010)
Shuangge Ma, Jian Huang
Regularized gene selection in cancer microarray meta-analysis. BMC Bioinform. 10 (2009)
Shuangge Ma, Michael R. Kosorok
Identification of differential gene pathways with principal component analysis. Bioinform. 25 (7) (2009)
Nam Tran, Pedro Alves, Shuangge Ma, Michael Krauthammer
Enriching PubMed Related Article Search with Sentence Level Co-citations. AMIA (2009)
Shuangge Ma, Jian Huang
Penalized feature selection and classification in bioinformatics. Briefings Bioinform. 9 (5) (2008)
Shuangge Ma, Jian Huang
Additive risk survival model with microarray data. BMC Bioinform. 8 (2007)
Shuangge Ma, Jian Huang
Clustering threshold gradient descent regularization: with applications to microarray studies. Bioinform. 23 (4) (2007)
Shuangge Ma, Xiao Song, Jian Huang
Supervised group Lasso with applications to microarray data analysis. BMC Bioinform. 8 (2007)
Shuangge Ma, Xiao Song, Jian Huang
Regularized binormal ROC method in disease classificationusing microarray data. BMC Bioinform. 7 (2006)
Shuangge Ma
Empirical study of supervised gene screening. BMC Bioinform. 7 (2006)
Shuangge Ma, Jian Huang
Regularized ROC method for disease classification and biomarker selection with microarray data. Bioinform. 21 (24) (2005)