Shu-Dong Zhang

Publication Activity (10 Years)

Years Active: 2004-2018
Publications (10 Years): 5

Top Topics

Computational Approaches

Drosophila Melanogaster

Top Venues

Briefings Bioinform.

Publications

Aliyu Musa, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib
A review of connectivity map and computational approaches in pharmacogenomics. Briefings Bioinform. 19 (3) (2018)
Gayathri Thillaiyampalam, Fabio Liberante, Liam Murray, Chris Cardwell, Ken I. Mills, Shu-Dong Zhang
An integrated meta-analysis approach to identifying medications with potential to alter breast cancer risk through connectivity mapping. BMC Bioinform. 18 (1) (2017)
Aliyu Musa, Laleh Soltan Ghoraie, Shu-Dong Zhang, Galina V. Glazko, Olli Yli-Harja, Matthias Dehmer, Benjamin Haibe-Kains, Frank Emmert-Streib
A review of connectivity map and computational approaches in pharmacogenomics. Briefings Bioinform. 18 (5) (2017)
Qing Wen, Chang Sik Kim, Peter Hamilton, Shu-Dong Zhang
A gene-signature progression approach to identifying candidate small-molecule cancer therapeutics with connectivity mapping. BMC Bioinform. 17 (2016)
Paul G. O'Reilly, Qing Wen, Peter Bankhead, Philip D. Dunne, Darragh G. McArt, Suzanne McPherson, Peter Hamilton, Ken I. Mills, Shu-Dong Zhang
QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics. BMC Bioinform. 17 (2016)
Chang Sik Kim, Seungwoo Hwang, Shu-Dong Zhang
RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis. BIBM (2014)
Chang Sik Kim, Qing Wen, Shu-Dong Zhang
Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures. BIBM (2014)
Darragh G. McArt, Peter Bankhead, Philip D. Dunne, Manuel Salto-Tellez, Peter Hamilton, Shu-Dong Zhang
cudaMap: a GPU accelerated program for gene expression connectivity mapping. BMC Bioinform. 14 (2013)
Shu-Dong Zhang, Timothy W. Gant
sscMap: An extensible Java application for connecting small-molecule drugs using gene-expression signatures. BMC Bioinform. 10 (2009)
Shu-Dong Zhang, Timothy W. Gant
A simple and robust method for connecting small-molecule drugs using gene-expression signatures. BMC Bioinform. 9 (2008)
Shu-Dong Zhang, Timothy W. Gant
Effect of pooling samples on the efficiency of comparative studies using microarrays. Bioinform. 21 (24) (2005)
Shu-Dong Zhang, Timothy W. Gant
A statistical framework for the design of microarray experiments and effective detection of differential gene expression. Bioinform. 20 (16) (2004)