Sharmila S. Mande

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 11

Top Topics

Protein Protein Interaction Networks

High Throughput

Biomedical Text

Genomic Sequences

Top Venues

J. Bioinform. Comput. Biol.

Publications

Krishanu Das Baksi, Vatsala Pokhrel, Anand Eruvessi Pudavar, Sharmila S. Mande, Bhusan K. Kuntal
BactInt: A domain driven transfer learning approach for extracting inter-bacterial associations from biomedical text. Comput. Biol. Chem. 109 (2024)
Krishanu Das Baksi, Vatsala Pokhrel, Bhusan K. Kuntal, Sharmila S. Mande
BactInt: A domain driven transfer learning approach and a corpus for extracting inter-bacterial interactions from biomedical text. CoRR (2023)
Vatsala Pokhrel, Bhusan K. Kuntal, Divyanshu Srivastava, Sharmila S. Mande, Krishanu Das Baksi
Utilizing domain-based features to improve classification accuracy of biomedical text having bacterial associations. BIBM (2021)
Sunil Nagpal, Bhusan K. Kuntal, Sharmila S. Mande
NetSets.js: a JavaScript framework for compositional assessment and comparison of biological networks through Venn-integrated network diagrams. Bioinform. 37 (4) (2021)
Swadha Anand, Bhusan K. Kuntal, Anwesha Mohapatra, Vineet Bhatt, Sharmila S. Mande
FunGeCo: a web-based tool for estimation of functional potential of bacterial genomes and microbiomes using gene context information. Bioinform. 36 (8) (2020)
Sunil Nagpal, Rashmi Singh, Deepak Yadav, Sharmila S. Mande
MetagenoNets: comprehensive inference and meta-insights for microbial correlation networks. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande
Correction to: CompNet: a GUI based tool for comparison of multiple biological interaction networks. BMC Bioinform. 20 (1) (2019)
Bhusan K. Kuntal, Sharmila S. Mande
Web-igloo: a web based platform for multivariate data visualization. Bioinform. 33 (4) (2017)
Bhusan K. Kuntal, Anirban Dutta, Sharmila S. Mande
CompNet: a GUI based tool for comparison of multiple biological interaction networks. BMC Bioinform. 17 (2016)
Tarini Shankar Ghosh, Varun Mehra, Sharmila S. Mande
Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly. J. Bioinform. Comput. Biol. 13 (3) (2015)
Anirban Dutta, Mohammed Monzoorul Haque, Tungadri Bose, Ch. V. Siva K. Reddy, Sharmila S. Mande
FQC: A novel approach for efficient compression, archival, and dissemination of fastq datasets. J. Bioinform. Comput. Biol. 13 (3) (2015)
Monzoorul Haque Mohammed, Anirban Dutta, Tungadri Bose, Sudha Chadaram, Sharmila S. Mande
DELIMINATE - a fast and efficient method for loss-less compression of genomic sequences: Sequence analysis. Bioinform. 28 (19) (2012)
Sharmila S. Mande, Monzoorul Haque Mohammed, Tarini Shankar Ghosh
Classification of metagenomic sequences: methods and challenges. Briefings Bioinform. 13 (6) (2012)
Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Hannah Rajasingh, Sudha Chadaram, Sharmila S. Mande
HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences. BMC Bioinform. 12 (S-13) (2011)
Monzoorul Haque Mohammed, Tarini Shankar Ghosh, Nitin Kumar Singh, Sharmila S. Mande
SPHINX - an algorithm for taxonomic binning of metagenomic sequences. Bioinform. 27 (1) (2011)
Tarini Shankar Ghosh, Monzoorul Haque Mohammed, Sharmila S. Mande
DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. BMC Bioinform. 11 (S-7) (2010)
Aparna B. Ganesh, Hannah Rajasingh, Sharmila S. Mande
Mathematical Modeling of Regulation of Type III Secretion System in Salmonella enterica Serovar Typhimurium by SirA. Silico Biol. 9 (1-2) (2009)
Mohammed Monzoorul Haque, Tarini Shankar Ghosh, Dinakar Komanduri, Sharmila S. Mande
SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. Bioinform. 25 (14) (2009)
Mathukumalli Vidyasagar, Sharmila S. Mande, Ch. V. Siva K. Reddy, V. V. Raja Rao
The 4M (Mixed Memory Markov Model) Algorithm for Finding Genes in Prokaryotic Genomes. IEEE Trans. Autom. Control. 53 (2008)
Issaac Rajan, Sarang Aravamuthan, Sharmila S. Mande
Identification of compositionally distinct regions in genomes using the centroid method. Bioinform. 23 (20) (2007)