Samuel A. Isaacson

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 8

Top Topics

White Blood Cells

Diffusion Processes

Monte Carlo Method

Diffusion Models

Top Venues

J. Comput. Phys.

SIAM J. Appl. Math.

PLoS Comput. Biol.

Publications

Samuel A. Isaacson, Ying Zhang
An Unstructured Mesh Reaction-Drift-Diffusion Master Equation with Reversible Reactions. CoRR (2024)
Torkel E. Loman, Yingbo Ma, Vasily Ilin, Shashi Gowda, Niklas Korsbo, Nikhil Yewale, Chris Rackauckas, Samuel A. Isaacson
Catalyst: Fast and flexible modeling of reaction networks. PLoS Comput. Biol. 19 (10) (2023)
Guilherme Augusto Zagatti, Samuel A. Isaacson, Christopher Rackauckas, Vasily Ilin, See-Kiong Ng, Stéphane Bressan
Extending JumpProcess.jl for fast point process simulation with time-varying intensities. CoRR (2023)
Samuel A. Isaacson, Jingwei Ma, Konstantinos Spiliopoulos
Mean Field Limits of Particle-Based Stochastic Reaction-Diffusion Models. SIAM J. Math. Anal. 54 (1) (2022)
Samuel A. Isaacson, Jingwei Ma, Konstantinos Spiliopoulos
How Reaction-Diffusion PDEs Approximate the Large-Population Limit of Stochastic Particle Models. SIAM J. Appl. Math. 81 (6) (2021)
Jingwei Ma, Myan Do, Mark A. Le Gros, Charles S. Peskin, Carolyn A. Larabell, Yoichiro Mori, Samuel A. Isaacson
Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus. PLoS Comput. Biol. 16 (11) (2020)
Samuel A. Isaacson, Ying Zhang
An unstructured mesh convergent reaction-diffusion master equation for reversible reactions. J. Comput. Phys. 374 (2018)
S. Jonathan Chapman, Radek Erban, Samuel A. Isaacson
Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics. SIAM J. Appl. Math. 76 (1) (2016)
Ava J. Mauro, Jon Karl Sigurdsson, Justin Shrake, Paul J. Atzberger, Samuel A. Isaacson
A First-Passage Kinetic Monte Carlo method for reaction-drift-diffusion processes. J. Comput. Phys. 259 (2014)
Samuel A. Isaacson, Robert M. Kirby
Numerical solution of linear Volterra integral equations of the second kind with sharp gradients. J. Comput. Appl. Math. 235 (14) (2011)
Samuel A. Isaacson
The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target. SIAM J. Appl. Math. 70 (1) (2009)
Samuel A. Isaacson, Charles S. Peskin
Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations. SIAM J. Sci. Comput. 28 (1) (2006)