Radek Erban

Publication Activity (10 Years)

Years Active: 2004-2017
Publications (10 Years): 7

Top Topics

Boundary Conditions

Stochastic Simulation

Top Venues

SIAM J. Appl. Math.

SIAM J. Sci. Comput.

J. Comput. Phys.

Publications

Mihai Cucuringu, Radek Erban
ADM-CLE Approach for Detecting Slow Variables in Continuous Time Markov Chains and Dynamic Data. SIAM J. Sci. Comput. 39 (1) (2017)
Edward Rolls, Yuichi Togashi, Radek Erban
Varying the Resolution of the Rouse Model on Temporal and Spatial Scales: Application to Multiscale Modeling of DNA Dynamics. Multiscale Model. Simul. 15 (4) (2017)
S. Jonathan Chapman, Radek Erban, Samuel A. Isaacson
Reactive Boundary Conditions as Limits of Interaction Potentials for Brownian and Langevin Dynamics. SIAM J. Appl. Math. 76 (1) (2016)
Andrew Duncan, Radek Erban, Konstantinos C. Zygalakis
Hybrid framework for the simulation of stochastic chemical kinetics. J. Comput. Phys. 326 (2016)
Ulrich Dobramysl, Sten Rüdiger, Radek Erban
Particle-Based Multiscale Modeling of Calcium Puff Dynamics. Multiscale Model. Simul. 14 (3) (2016)
Radek Erban, Jan Haskovec, Yongzheng Sun
A Cucker-Smale Model with Noise and Delay. SIAM J. Appl. Math. 76 (4) (2016)
Simon L. Cotter, Radek Erban
Error Analysis of Diffusion Approximation Methods for Multiscale Systems in Reaction Kinetics. SIAM J. Sci. Comput. 38 (1) (2016)
Mark B. Flegg, Stefan Hellander, Radek Erban
Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations. J. Comput. Phys. 289 (2015)
Martin Robinson, Steven S. Andrews, Radek Erban
Multiscale reaction-diffusion simulations with Smoldyn. Bioinform. 31 (14) (2015)
Mihai Cucuringu, Radek Erban
ADM-CLE approach for detecting slow variables in continuous time Markov chains and dynamic data. CoRR (2015)
Mark B. Flegg, S. Jonathan Chapman, Likun Zheng, Radek Erban
Analysis of the Two-Regime Method on Square Meshes. SIAM J. Sci. Comput. 36 (3) (2014)
Jake P. Taylor-King, Benjamin Franz, Christian A. Yates, Radek Erban
Mathematical Modelling of Turning Delays in Swarm Robotics. CoRR (2014)
Wan Chen, Radek Erban, S. Jonathan Chapman
From Brownian Dynamics to Markov Chain: An Ion Channel Example. SIAM J. Appl. Math. 74 (1) (2014)
Benjamin Franz, Mark B. Flegg, S. Jonathan Chapman, Radek Erban
Multiscale Reaction-Diffusion Algorithms: PDE-Assisted Brownian Dynamics. SIAM J. Appl. Math. 73 (3) (2013)
Simon L. Cotter, Tomás Vejchodský, Radek Erban
Adaptive Finite Element Method Assisted by Stochastic Simulation of Chemical Systems. SIAM J. Sci. Comput. 35 (1) (2013)
Guido Klingbeil, Radek Erban, Mike B. Giles, Philip K. Maini
Fat versus Thin Threading Approach on GPUs: Application to Stochastic Simulation of Chemical Reactions. IEEE Trans. Parallel Distributed Syst. 23 (2) (2012)
Tamás Székely, Kevin Burrage, Radek Erban, Konstantinos C. Zygalakis
A higher-order numerical framework for stochastic simulation of chemical reaction systems. BMC Syst. Biol. 6 (2012)
Guido Klingbeil, Radek Erban, Mike B. Giles, Philip K. Maini
STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB. Bioinform. 27 (8) (2011)
Jana Lipková, Konstantinos C. Zygalakis, S. Jonathan Chapman, Radek Erban
Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions. SIAM J. Appl. Math. 71 (3) (2011)
Radek Erban, S. Jonathan Chapman, Ioannis G. Kevrekidis, Tomás Vejchodský
Analysis of a Stochastic Chemical System Close to a SNIPER Bifurcation of Its Mean-Field Model. SIAM J. Appl. Math. 70 (3) (2009)
Michail E. Kavousanakis, Radek Erban, Andreas G. Boudouvis, C. William Gear, Ioannis G. Kevrekidis
Projective and coarse projective integration for problems with continuous symmetries. J. Comput. Phys. 225 (1) (2007)
Radek Erban, Hans G. Othmer
: A Paradigm for Multiscale Modeling in Biology. Multiscale Model. Simul. 3 (2) (2005)
Radek Erban, Hans G. Othmer
From Individual to Collective Behavior in Bacterial Chemotaxis. SIAM J. Appl. Math. 65 (2) (2004)