Rui Oliveira

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 4

Top Topics

Principal Components

Friendly Interface

Top Venues

Comput. Chem. Eng.

Publications

José Pinto, Rafael S. Costa, Leonardo Alexandre, João Ramos, Rui Oliveira
SBML2HYB: a Python interface for SBML compatible hybrid modeling. Bioinform. 39 (1) (2023)
José Pinto, Mykaella Mestre, J. Ramos, Rafael S. Costa, Gerald Striedner, Rui Oliveira
A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks. Comput. Chem. Eng. 165 (2022)
Moritz von Stosch, Cristiana Rodrigues de Azevedo, Mauro Luis, Sebastião Feyo de Azevedo, Rui Oliveira
A principal components method constrained by elementary flux modes: analysis of flux data sets. BMC Bioinform. 17 (2016)
Seyong Jung, Jie Zhang, Rui Oliveira
Iterative learning control of polyhydroxybutyrate production in a sequencing batch reactor. MMAR (2015)
Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo
Hybrid semi-parametric modeling in process systems engineering: Past, present and future. Comput. Chem. Eng. 60 (2014)
António Roldão, Maria Candida M. Mellado, J. C. Lima, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP. PLoS Comput. Biol. 8 (2) (2012)
Ana P. Teixeira, João M. L. Dias, Nuno Carinhas, Marcos Sousa, José Clemente, António Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira
Cell functional enviromics: Unravelling the function of environmental factors. BMC Syst. Biol. 5 (2011)
Nuno Carinhas, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products. BMC Syst. Biol. 5 (2011)
Ana R. Ferreira, João M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Inês A. Isidro, Moritz von Stosch, Rui Oliveira
Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination. BMC Syst. Biol. 5 (2011)
Moritz von Stosch, Rui Oliveira, Joana Peres, Sebastião Feyo de Azevedo
A novel identification method for hybrid (N)PLS dynamical systems with application to bioprocesses. Expert Syst. Appl. 38 (9) (2011)
Moritz von Stosch, Joana Peres, Sebastião Feyo de Azevedo, Rui Oliveira
Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach. BMC Syst. Biol. 4 (2010)
João M. L. Dias, Adrian Oehmen, Luísa S. Serafim, Paulo C. Lemos, Maria A. M. Reis, Rui Oliveira
Metabolic modelling of polyhydroxyalkanoate copolymers production by mixed microbial cultures. BMC Syst. Biol. 2 (2008)
António Roldão, Manuel J. T. Carrondo, Paula M. Alves, Rui Oliveira
Stochastic simulation of protein expression in the baculovirus/insect cells system. Comput. Chem. Eng. 32 (1-2) (2008)
Ana P. Teixeira, Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, Rui Oliveira
Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control. BMC Bioinform. 8 (2007)
Ana P. Teixeira, Paula M. Alves, Rui Oliveira, Carlos Alves, Manuel J. T. Carrondo
Hybrid Metabolic Flux Analysis/Artificial Neural Network Modeling of Bioprocesses. HIS (2005)
Rui Oliveira
Combining first principles modelling and artificial neural networks: a general framework. Comput. Chem. Eng. 28 (5) (2004)