Rafael Najmanovich

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 7

Top Topics

Biological Processes

Protein Interaction

Scripting Language

Top Venues

SpringSim (TMS-DEVS)

J. Chem. Inf. Model.

BMC Syst. Biol.

Publications

Natália Teruel, Vinicius Magalhães Borges, Rafael Najmanovich
Surfaces: a software to quantify and visualize interactions within and between proteins and ligands. Bioinform. 39 (10) (2023)
Olivier Mailhot, François Major, Rafael Najmanovich
The DynaSig-ML Python package: automated learning of biomolecular dynamics-function relationships. Bioinform. 39 (4) (2023)
Matthew Crown, Natália Teruel, Rafael Najmanovich, Matthew Bashton
SPEAR: Systematic ProtEin AnnotatoR. Bioinform. 38 (15) (2022)
Olivier Mailhot, Rafael Najmanovich
The NRGTEN Python package: an extensible toolkit for coarse-grained normal mode analysis of proteins, nucleic acids, small molecules and their complexes. Bioinform. 37 (19) (2021)
Matthieu Chartier, Etienne Adriansen, Rafael Najmanovich
IsoMIF Finder: online detection of binding site molecular interaction field similarities. Bioinform. 32 (4) (2016)
Laouen Belloli, Gabriel A. Wainer, Rafael Najmanovich
Parsing and model generation for biological processes. SpringSim (TMS-DEVS) (2016)
Matthieu Chartier, Rafael Najmanovich
Detection of Binding Site Molecular Interaction Field Similarities. J. Chem. Inf. Model. 55 (8) (2015)
Mathieu Larocque, Thierry Chénard, Rafael Najmanovich
A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors. BMC Syst. Biol. 8 (2014)
Francis Gaudreault, Matthieu Chartier, Rafael Najmanovich
Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding. Bioinform. 28 (18) (2012)
Matthieu Chartier, Francis Gaudreault, Rafael Najmanovich
Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events. Bioinform. 28 (11) (2012)
Valérie Campagna-Slater, Man Wai Mok, Kong T. Nguyen, Miklos Feher, Rafael Najmanovich, Matthieu Schapira
Structural Chemistry of the Histone Methyltransferases Cofactor Binding Site. J. Chem. Inf. Model. 51 (3) (2011)
Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. ECCB (2008)
Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards, Cheryl H. Arrowsmith, Janet M. Thornton
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinform. 23 (2) (2007)
Richard J. Morris, Rafael Najmanovich, Abdullah Kahraman, Janet M. Thornton
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinform. 21 (10) (2005)
Eran Eyal, Rafael Najmanovich, Brendan J. McConkey, Marvin Edelman, Vladimir Sobolev
Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins. J. Comput. Chem. 25 (5) (2004)
Eran Eyal, Rafael Najmanovich, Vladimir Sobolev, Marvin Edelman
MutaProt: a web interface for structural analysis of point mutations. Bioinform. 17 (4) (2001)