Paul Stothard

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 4

Top Topics

Escherichia Coli

Comparative Analysis

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Jason R. Grant, Eric Enns, Eric Marinier, Arnab Mandal, Emily K. Herman, Chih-yu Chen, Morag Graham, Gary H. Van Domselaar, Paul Stothard
Proksee: in-depth characterization and visualization of bacterial genomes. Nucleic Acids Res. 51 (W1) (2023)
David S. Wishart, Scott Han, Sukanta Saha, Eponine Oler, Harrison Peters, Jason R. Grant, Paul Stothard, Vasuk Gautam
PHASTEST: faster than PHASTER, better than PHAST. Nucleic Acids Res. 51 (W1) (2023)
David S. Wishart, Leah Ren, Jacques Leong-Sit, Sukanta Saha, Jason R. Grant, Paul Stothard, Upasana Singh, Abby Kropielnicki, Eponine Oler, Harrison Peters, Vasuk Gautam
PlasMapper 3.0 - a web server for generating, editing, annotating and visualizing publication quality plasmid maps. Nucleic Acids Res. 51 (W1) (2023)
Paul Stothard, Jason R. Grant, Gary H. Van Domselaar
Visualizing and comparing circular genomes using the CGView family of tools. Briefings Bioinform. 20 (4) (2019)
Yining Wang, Tim Wylie, Paul Stothard, Guohui Lin
Whole genome SNP genotype piecemeal imputation. BMC Bioinform. 16 (2015)
Joseph A. Cruz, Yifeng Liu, Yongjie Liang, You Zhou, Michael Wilson, Jonathan J. Dennis, Paul Stothard, Gary H. Van Domselaar, David S. Wishart
BacMap: an up-to-date electronic atlas of annotated bacterial genomes. Nucleic Acids Res. 40 (Database-Issue) (2012)
Jason R. Grant, Adriano S. Arantes, Xiaoping Liao, Paul Stothard
In-depth annotation of SNPs arising from resequencing projects using NGS-SNP. Bioinform. 27 (16) (2011)
Aaron J. Petkau, Matthew Stuart-Edwards, Paul Stothard, Gary H. Van Domselaar
Interactive microbial genome visualization with GView. Bioinform. 26 (24) (2010)
Mark V. Berjanskii, Yongjie Liang, Jianjun Zhou, Peter Tang, Paul Stothard, You Zhou, Joseph A. Cruz, Cam Macdonell, Guohui Lin, Paul Lu, David S. Wishart
PROSESS: a protein structure evaluation suite and server. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Zhipeng Cai, Hadi Sabaa, Yining Wang, Randy Goebel, Zhiquan Wang, Jiaofen Xu, Paul Stothard, Guohui Lin
Most parsimonious haplotype allele sharing determination. BMC Bioinform. 10 (2009)
Jason R. Grant, Paul Stothard
The CGView Server: a comparative genomics tool for circular genomes. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Dean Cheng, Craig Knox, Nelson Young, Paul Stothard, Sambasivarao Damaraju, David S. Wishart
PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser
HMDB: the Human Metabolome Database. Nucleic Acids Res. 35 (Database-Issue) (2007)
Craig Knox, Savita Shrivastava, Paul Stothard, Roman Eisner, David S. Wishart
Biospider: A Web Server for Automating Metabolome Annotations. Pacific Symposium on Biocomputing (2007)
David S. Wishart, Craig Knox, Anchi Guo, Savita Shrivastava, Murtaza Hassanali, Paul Stothard, Zhan Chang, Jennifer Woolsey
drug discovery and exploration. Nucleic Acids Res. 34 (Database-Issue) (2006)
Paul Stothard, David S. Wishart
Circular genome visualization and exploration using CGView. Bioinform. 21 (4) (2005)
Paul Stothard, Gary H. Van Domselaar, Savita Shrivastava, Anchi Guo, Brian O'Neill, Joseph A. Cruz, Michael Ellison, David S. Wishart
BacMap: an interactive picture atlas of annotated bacterial genomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Gary H. Van Domselaar, Paul Stothard, Savita Shrivastava, Joseph A. Cruz, Anchi Guo, Xiaoli Dong, Paul Lu, Duane Szafron, Russell Greiner, David S. Wishart
BASys: a web server for automated bacterial genome annotation. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Shan Sundararaj, Anchi Guo, Bahram Habibi-Nazhad, Melania Rouani, Paul Stothard, Michael Ellison, David S. Wishart
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res. 32 (Database-Issue) (2004)
Xiaoli Dong, Paul Stothard, Ian J. Forsythe, David S. Wishart
PlasMapper: a web server for drawing and auto-annotating plasmid maps. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)