David Arndt

Publication Activity (10 Years)

Years Active: 2004-2022
Publications (10 Years): 8

Top Topics

Refractive Index

Secondary Structure

Database Management

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

David S. Wishart, Anchi Guo, Eponine Oler, Fei Wang, Afia Anjum, Harrison Peters, Raynard Dizon, Zinat Sayeeda, Siyang Tian, Brian L. Lee, Mark V. Berjanskii, Robert Mah, Mai Yamamoto, Juan Jovel, Claudia Torres-Calzada, Mickel Hiebert-Giesbrecht, Vicki W. Lui, Dorna Varshavi, Dorsa Varshavi, Dana Allen, David Arndt, Nitya Khetarpal, Aadhavya Sivakumaran, Karxena Harford, Selena Sanford, Kristen Yee, Xuan Cao, Zachary Budinski, Jaanus Liigand, Lun Zhang, Jiamin Zheng, Rupasri Mandal, Naama Karu, Maija Dambrova, Helgi B. Schiöth, Russell Greiner, Vasuk Gautam
HMDB 5.0: the Human Metabolome Database for 2022. Nucleic Acids Res. 50 (D1) (2022)
David Arndt, Ana Marcu, Yongjie Liang, David S. Wishart
PHAST, PHASTER and PHASTEST: Tools for finding prophage in bacterial genomes. Briefings Bioinform. 20 (4) (2019)
David S. Wishart, Yannick Djoumbou Feunang, Ana Marcu, An Chi Guo, Kevin Y. H. Liang, Rosa Vázquez-Fresno, Tanvir Sajed, Daniel Johnson, Carin Li, Naama Karu, Zinat Sayeeda, Elvis J. Lo, Nazanin Assempour, Mark V. Berjanskii, Sandeep Singhal, David Arndt, Yongjie Liang, Hasan Badran, Jason R. Grant, Arnau Serra-Cayuela, Yifeng Liu, Rupa Mandal, Vanessa Neveu, Allison Pon, Craig Knox, Michael Wilson, Claudine Manach, Augustin Scalbert
HMDB 4.0: the human metabolome database for 2018. Nucleic Acids Res. 46 (Database-Issue) (2018)
Miguel Ramirez-Gaona, Ana Marcu, Allison Pon, An Chi Guo, Tanvir Sajed, Noah A. Wishart, Naama Karu, Yannick Djoumbou Feunang, David Arndt, David S. Wishart
YMDB 2.0: a significantly expanded version of the yeast metabolome database. Nucleic Acids Res. 45 (Database-Issue) (2017)
David Arndt, Jason R. Grant, Ana Marcu, Tanvir Sajed, Allison Pon, Yongjie Liang, David S. Wishart
PHASTER: a better, faster version of the PHAST phage search tool. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Sasha Babicki, David Arndt, Ana Marcu, Yongjie Liang, Jason R. Grant, Adam Maciejewski, David S. Wishart
Heatmapper: web-enabled heat mapping for all. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Noor E. Hafsa, David Arndt, David S. Wishart
CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
David S. Wishart, David Arndt, Allison Pon, Tanvir Sajed, Anchi Guo, Yannick Djoumbou, Craig Knox, Michael Wilson, Yongjie Liang, Jason R. Grant, Yifeng Liu, Seyed Ali Goldansaz, Stephen M. Rappaport
T3DB: the toxic exposome database. Nucleic Acids Res. 43 (Database-Issue) (2015)
Timothy Jewison, Yilu Su, Fatemeh Miri Disfany, Yongjie Liang, Craig Knox, Adam Maciejewski, Jenna Poelzer, Jessica Huynh, You Zhou, David Arndt, Yannick Djoumbou, Yifeng Liu, Lu Deng, Anchi Guo, Beomsoo Han, Allison Pon, Michael Wilson, Shahrzad Rafatnia, Philip Liu, David S. Wishart
SMPDB 2.0: Big Improvements to the Small Molecule Pathway Database. Nucleic Acids Res. 42 (Database-Issue) (2014)
Vivian Law, Craig Knox, Yannick Djoumbou, Timothy Jewison, Anchi Guo, Yifeng Liu, Adam Maciejewski, David Arndt, Michael Wilson, Vanessa Neveu, Alexandra Tang, Geraldine Gabriel, Carol Ly, Sakina Adamjee, Zerihun T. Dame, Beomsoo Han, You Zhou, David S. Wishart
DrugBank 4.0: shedding new light on drug metabolism. Nucleic Acids Res. 42 (Database-Issue) (2014)
David S. Wishart, Timothy Jewison, Anchi Guo, Michael Wilson, Craig Knox, Yifeng Liu, Yannick Djoumbou, Rupasri Mandal, Farid Aziat, Edison Dong, Souhaila Bouatra, Igor Sinelnikov, David Arndt, Jianguo Xia, Philip Liu, Faizath Yallou, Trent C. Bjorndahl, Rolando Perez-Pineiro, Roman Eisner, Felicity Allen, Vanessa Neveu, Russell Greiner, Augustin Scalbert
HMDB 3.0 - The Human Metabolome Database in 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
David Arndt, Jianguo Xia, Yifeng Liu, You Zhou, Anchi Guo, Joseph A. Cruz, Igor Sinelnikov, Karen Budwill, Camilla L. Nesbø, David S. Wishart
METAGENassist: a comprehensive web server for comparative metagenomics. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin
PPT-DB: the protein property prediction and testing database. Nucleic Acids Res. 36 (Database-Issue) (2008)
Yi Shi, Jianjun Zhou, David Arndt, David S. Wishart, Guohui Lin
Protein contact order prediction from primary sequences. BMC Bioinform. 9 (2008)
Scott Montgomerie, Joseph A. Cruz, Savita Shrivastava, David Arndt, Mark V. Berjanskii, David S. Wishart
PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
David S. Wishart, David Arndt, Mark V. Berjanskii, Peter Tang, Jianjun Zhou, Guohui Lin
CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
David S. Wishart, Dan Tzur, Craig Knox, Roman Eisner, Anchi Guo, Nelson Young, Dean Cheng, Kevin Jewell, David Arndt, Summit Sawhney, Chris Fung, Lisa Nikolai, Mike Lewis, Marie-Aude Coutouly, Ian J. Forsythe, Peter Tang, Savita Shrivastava, Kevin Jeroncic, Paul Stothard, Godwin Amegbey, David Block, David D. Hau, James Wagner, Jessica Miniaci, Melisa Clements, Mulu Gebremedhin, Natalie Guo, Ying Zhang, Gavin E. Duggan, Glen D. MacInnis, Alim M. Weljie, Reza Dowlatabadi, Fiona Bamforth, Derrick Clive, Russell Greiner, Liang Li, Tom Marrie, Brian D. Sykes, Hans J. Vogel, Lori Querengesser
HMDB: the Human Metabolome Database. Nucleic Acids Res. 35 (Database-Issue) (2007)
David S. Wishart, Robert Yang, David Arndt, Peter Tang, Joseph A. Cruz
Dynamic cellular automata: a simple but powerful approach to cellular simulation. Silico Biol. 5 (2) (2004)