Otto Valladares

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 7

Top Topics

High Throughput

Gene Expression

Top Venues

Nucleic Acids Res.

Publications

Jeffrey Cifello, Pavel P. Kuksa, Naveensri Saravanan, Otto Valladares, Li-San Wang, Yuk Yee Leung
hipFG: high-throughput harmonization and integration pipeline for functional genomics data. Bioinform. 39 (11) (2023)
Pavel P. Kuksa, Chien-Yueh Lee, Alexandre Amlie-Wolf, Prabhakaran Gangadharan, Elizabeth E. Mlynarski, Yi-Fan Chou, Han-Jen Lin, Heather Issen, Emily Greenfest-Allen, Otto Valladares, Yuk Yee Leung, Li-San Wang
SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants. Bioinform. 36 (12) (2020)
Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. Bioinform. 35 (6) (2019)
Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, William J. Salerno, Gerard D. Schellenberg, Li-San Wang
VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinform. 35 (10) (2019)
Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, Prabhakaran Gangadharan, William J. Salerno, Gerard D. Schellenberg, Li-San Wang
VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project. Bioinform. 35 (11) (2019)
Pavel P. Kuksa, Alexandre Amlie-Wolf, Zivadin Katanic, Otto Valladares, Li-San Wang, Yuk Yee Leung
SPAR: small RNA-seq portal for analysis of sequencing experiments. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Yuk Yee Leung, Pavel P. Kuksa, Alexandre Amlie-Wolf, Otto Valladares, Lyle H. Ungar, Sampath Kannan, Brian D. Gregory, Li-San Wang
DASHR: database of small human noncoding RNAs. Nucleic Acids Res. 44 (Database-Issue) (2016)
Yih-Chii Hwang, Chiao-Feng Lin, Otto Valladares, John Malamon, Pavel P. Kuksa, Qi Zheng, Brian D. Gregory, Li-San Wang
HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements. Bioinform. 31 (8) (2015)
Chiao-Feng Lin, Otto Valladares, Daniel M. Childress, Egor Klevak, Evan T. Geller, Yih-Chii Hwang, Ellen A. Tsai, Gerard D. Schellenberg, Li-San Wang
DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments. Bioinform. 29 (19) (2013)
Fan Li, Paul Ryvkin, Daniel M. Childress, Otto Valladares, Brian D. Gregory, Li-San Wang
SAVoR: a server for sequencing annotation and visualization of RNA structures. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)