Osmar Norberto de Souza

Publication Activity (10 Years)

Years Active: 1994-2019
Publications (10 Years): 9

Top Topics

Virtual Screening

Molecular Dynamics

Protein Structure

Top Venues

Expert Syst. Appl.

Publications

Walter Ritzel Paixão-Cortes, Vanessa Stangherlin Machado Paixão-Cortes, Cristiane Ellwanger, Osmar Norberto de Souza
Development and Usability Evaluation of a Prototype Conversational Interface for Biological Information Retrieval via Bioinformatics. HCI (4) (2019)
Vanessa Stangherlin Machado Paixão-Cortes, Walter Ritzel Paixão-Cortes, Márcia de Borba Campos, Osmar Norberto de Souza
A Panorama on Selection and Use of Bioinformatics Tools in the Brazilian University Context. HCI (8) (2018)
Vanessa Stangherlin Machado Paixão-Cortes, Michele dos Santos da Silva Tanus, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos, Milene Selbach Silveira
Usability as the Key Factor to the Design of a Web Server for the CReF Protein Structure Predictor: The wCReF. Inf. 9 (1) (2018)
Renata De Paris, Christian Vahl Quevedo, Duncan D. Ruiz, Furia Gargano, Osmar Norberto de Souza
A selective method for optimizing ensemble docking-based experiments on an InhA Fully-Flexible receptor model. BMC Bioinform. 19 (1) (2018)
Vanessa Stangherlin Machado, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos
Decision-Making for Interactive Systems: A Case Study for Teaching and Learning in Bioinformatics. HCI (26) (2017)
Thiago Lipinski-Paes, Michele dos Santos da Silva Tanus, José Fernando Ruggiero Bachega, Osmar Norberto de Souza
A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts. ISBRA (2016)
Renata De Paris, Christian Vahl Quevedo, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza, Rodrigo C. Barros
Clustering Molecular Dynamics Trajectories for Optimizing Docking Experiments. Comput. Intell. Neurosci. 2015 (2015)
Patricia Hübler, Duncan Dubugras A. Ruiz, João Eduardo Ferreira, Osmar Norberto de Souza
P-SaMI: a data-flow pattern to perform massively-parallel molecular docking experiments using a fully-flexible receptor model. SAC (2015)
Renata De Paris, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza
A Cloud-Based Workflow Approach for Optimizing Molecular Docking Simulations of Fully-Flexible Receptor Models and Multiple Ligands. CloudCom (2015)
Thiago Lipinski-Paes, Osmar Norberto de Souza
MASTERS: A General Sequence-based MultiAgent System for Protein TERtiary Structure Prediction. Electron. Notes Theor. Comput. Sci. 306 (2014)
Christian Vahl Quevedo, Renata De Paris, Duncan D. Ruiz, Osmar Norberto de Souza
A strategic solution to optimize molecular docking simulations using Fully-Flexible Receptor models. Expert Syst. Appl. 41 (16) (2014)
Karina C. M. Dall'Agno, Osmar Norberto de Souza
An expert protein loop refinement protocol by molecular dynamics simulations with restraints. Expert Syst. Appl. 40 (7) (2013)
Ivani Pauli, Ricardo N. dos Santos, Diana C. Rostirolla, Leonardo K. Martinelli, Rodrigo G. Ducati, Luís Fernando S. M. Timmers, Luiz Augusto Basso, Diógenes Santiago Santos, Rafael V. C. Guido, Adriano D. Andricopulo, Osmar Norberto de Souza
InhA Enzyme Using Virtual Screening and a 3D-Pharmacophore-Based Approach. J. Chem. Inf. Model. 53 (9) (2013)
Márcio Dorn, Osmar Norberto de Souza
An interval-based algorithm to represent conformational states of experimentally determined polypeptide templates and fast prediction of approximated 3D protein structures. Int. J. Bioinform. Res. Appl. 9 (5) (2013)
Ana T. Winck, Christian Vahl Quevedo, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz
A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors. BSB (2012)
Rodrigo C. Barros, Ana T. Winck, Karina S. Machado, Márcio P. Basgalupp, André Carlos Ponce de Leon Ferreira de Carvalho, Duncan D. Ruiz, Osmar Norberto de Souza
Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data. BMC Bioinform. 13 (2012)
Renata De Paris, Fábio A. Frantz, Osmar Norberto de Souza, Duncan D. Ruiz
A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model. BSB (2011)
Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza
Mining flexible-receptor molecular docking data. WIREs Data Mining Knowl. Discov. 1 (6) (2011)
Márcio Dorn, Osmar Norberto de Souza
Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides. Int. J. Data Min. Bioinform. 4 (3) (2010)
Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza
Discretization of Flexible-Receptor Docking Data. BSB (2010)
Márcio Dorn, Osmar Norberto de Souza
A3N: An artificial neural network n-gram-based method to approximate 3-D polypeptides structure prediction. Expert Syst. Appl. 37 (12) (2010)
Ana T. Winck, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz
FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database. BSB (2009)
Márcio Dorn, Osmar Norberto de Souza
CReF: a central-residue-fragment-based method for predicting approximate 3-D polypeptides structures. SAC (2008)
Márcio Dorn, Ardala Breda, Osmar Norberto de Souza
A Hybrid Method for the Protein Structure Prediction Problem. BSB (2008)
Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Ana Wink, Osmar Norberto de Souza
Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments. BSB (2008)
Cláudia Lemelle Fernandes, Ardala Breda, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
A structural model for chorismate synthase from Mycobacterium tuberculosis in complex with coenzyme and substrate. Comput. Biol. Medicine 37 (2) (2007)
Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Osmar Norberto de Souza
Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows. BSB (2007)
Ricardo M. Czekster, Osmar Norberto de Souza
- A Desktop Virtual Environment for Visualization and Analysis of Protein Multiple Simulation Trajectories. ICCSA (1) (2006)
Marco Aurélio Stelmar Netto, Ardala Breda, Osmar Norberto de Souza
Scheduling complex computer simulations on heterogeneous non-dedicated machines: a case study in structural bioinformatics. CCGRID (2005)
Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza
. BSB (2005)
Andrei Oliveira da Silva, Osmar Norberto de Souza
A framework for result handling in bioinformatics: an application to computer assisted drug design. SAC (2005)
Ricardo M. Czekster, Osmar Norberto de Souza
- A Graphical Open-Source Architecture for Use in Structural Bioinformatics. BSB (2005)
Osmar Norberto de Souza, Julia M. Goodfellow
Molecular dynamics simulations of oligonucleotides in solution: Visualisation of intrinsic curvature. J. Comput. Aided Mol. Des. 8 (3) (1994)