Olivier Gandrillon

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 12

Top Topics

Gene Interactions

Gene Regulatory Networks

Top Venues

Publications

Matteo Bouvier, Souad Zreika, Elodie Vallin, Camille Fourneaux, Sandrine Gonin-Giraud, Arnaud Bonnaffoux, Olivier Gandrillon
TopoDoE: a design of experiment strategy for selection and refinement in ensembles of executable gene regulatory networks. BMC Bioinform. 25 (1) (2024)
Maxime Estavoyer, Marion Dufeu, Grégoire Ranson, Sylvain Lefort, Thibault Voeltzel, Véronique Maguer-Satta, Olivier Gandrillon, Thomas Lepoutre
Modeling relaxation experiments with a mechanistic model of gene expression. BMC Bioinform. 25 (1) (2024)
Elias Ventre, Ulysse Herbach, Thibault Espinasse, Gérard Benoit, Olivier Gandrillon
One model fits all: Combining inference and simulation of gene regulatory networks. PLoS Comput. Biol. 19 (3) (2023)
Anthony Ozier-Lafontaine, Camille Fourneaux, Ghislain Durif, Céline Vallot, Olivier Gandrillon, Sandrine Giraud, Bertrand Michel, Franck Picard
Kernel-Based Testing for Single-Cell Differential Analysis. CoRR (2023)
Maxime Lepetit, Mirela Diana Ilie, Marie Chanal, Gerald Raverot, Philippe Bertolino, Christophe Arpin, Franck Picard, Olivier Gandrillon
scAN1.0: A reproducible and standardized pipeline for processing 10X single cell RNAseq data. Silico Biol. 15 (1-2) (2023)
Ronan Duchesne, Anissa Guillemin, Olivier Gandrillon, Fabien Crauste
Practical identifiability in the frame of nonlinear mixed effects models: the example of the in vitro erythropoiesis. BMC Bioinform. 22 (1) (2021)
Chloe Audebert, Daphné Laubreton, Christophe Arpin, Olivier Gandrillon, Jacqueline Marvel, Fabien Crauste
Modeling and characterization of inter-individual variability in CD8 T cell responses in mice. Silico Biol. 14 (1-2) (2021)
Arnaud Bonnaffoux, Ulysse Herbach, Angélique Richard, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon
WASABI: a dynamic iterative framework for gene regulatory network inference. BMC Bioinform. 20 (1) (2019)
Ronan Duchesne, Anissa Guillemin, Fabien Crauste, Olivier Gandrillon
Erythropoiesis in Normal and Perturbed Contexts. Silico Biol. 13 (1-2) (2019)
Nan Papili Gao, S. M. Minhaz Ud-Dean, Olivier Gandrillon, Rudiyanto Gunawan
SINCERITIES: inferring gene regulatory networks from time-stamped single cell transcriptional expression profiles. Bioinform. 34 (2) (2018)
Arnaud Bonnaffoux, Eddy Caron, Hadrien Croubois, Olivier Gandrillon
A Cloud-aware Autonomous Workflow Engine and Its Application to Gene Regulatory Networks Inference. CLOSER (2018)
Xuefeng Gao, Christophe Arpin, Jacqueline Marvel, Sotiris A. Prokopiou, Olivier Gandrillon, Fabien Crauste
T cell-APC: a multiscale modeling study. BMC Syst. Biol. 10 (2016)
Peggy Cellier, Thierry Charnois, Marc Plantevit, Christophe Rigotti, Bruno Crémilleux, Olivier Gandrillon, Jirí Kléma, Jean-Luc Manguin
Sequential pattern mining for discovering gene interactions and their contextual information from biomedical texts. J. Biomed. Semant. 6 (2015)
Pierre-Nicolas Mougel, Christophe Rigotti, Marc Plantevit, Olivier Gandrillon
Finding maximal homogeneous clique sets. Knowl. Inf. Syst. 39 (3) (2014)
Sotiris A. Prokopiou, Loïc Barbarroux, Samuel Bernard, Julien Mafille, Yann Leverrier, Christophe Arpin, Jacqueline Marvel, Olivier Gandrillon, Fabien Crauste
Multiscale Modeling of the Early CD8 T-Cell Immune Response in Lymph Nodes: An Integrative Study. Comput. 2 (4) (2014)
Pierre-Nicolas Mougel, Christophe Rigotti, Olivier Gandrillon
Finding Collections of k-Clique Percolated Components in Attributed Graphs. PAKDD (2) (2012)
Pierre-Nicolas Mougel, Marc Plantevit, Christophe Rigotti, Olivier Gandrillon, Jean-François Boulicaut
Extraction sous contraintes d'ensembles de cliques homogènes. EGC (2011)
Antoine Coulon, Olivier Gandrillon, Guillaume Beslon
On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter. BMC Syst. Biol. 4 (2010)
Ieva Mitasiunaite, Christophe Rigotti, Stéphane Schicklin, Laurène Meyniel, Jean-François Boulicaut, Olivier Gandrillon
Extracting Signature Motifs from Promoter Sets of Differentially Expressed Genes. Silico Biol. 9 (1-2) (2009)
Laurent Boyer, Olivier Gandrillon, Amaury Habrard, Mathilde Pellerin, Marc Sebban
Learning Constrained Edit State Machines. ICTAI (2009)
Jirí Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Crémilleux, Olivier Gandrillon
Constraint-Based Knowledge Discovery from SAGE Data. Silico Biol. 8 (2) (2008)
Johan Leyritz, Stéphane Schicklin, Sylvain Blachon, Céline Keime, Céline Robardet, Jean-François Boulicaut, Jérémy Besson, Ruggero G. Pensa, Olivier Gandrillon
SQUAT: A web tool to mine human, murine and avian SAGE data. BMC Bioinform. 9 (2008)
Céline Keime, Marie Sémon, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon
Unexpected observations after mapping LongSAGE tags to the human genome. BMC Bioinform. 8 (2007)
Antoine Coulon, Hédi Soula, Olivier Mazet, Olivier Gandrillon, Guillaume Beslon
Modélisation cellulaire pour l'émergence de structures multiprotéiques auto-organisées. Tech. Sci. Informatiques 26 (1-2) (2007)
Sylvain Blachon, Ruggero G. Pensa, Jérémy Besson, Céline Robardet, Jean-François Boulicaut, Olivier Gandrillon
Clustering Formal Concepts to Discover Biologically Relevant Knowledge from Gene Expression Data. Silico Biol. 7 (4-5) (2007)
Jirí Kléma, Arnaud Soulet, Bruno Crémilleux, Sylvain Blachon, Olivier Gandrillon
Mining Plausible Patterns from Genomic Data. CBMS (2006)
Hédi Soula, Céline Robardet, François Perrin, Sébastien Gripon, Guillaume Beslon, Olivier Gandrillon
Modeling the emergence of multi-protein dynamic structures by principles of self-organization through the use of 3DSpi, a multi-agent-based software. BMC Bioinform. 6 (2005)
Céline Keime, Francesca Damiola, Dominique Mouchiroud, Laurent Duret, Olivier Gandrillon
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries. BMC Bioinform. 5 (2004)
François Rioult, Céline Robardet, Sylvain Blachon, Bruno Crémilleux, Olivier Gandrillon, Jean-François Boulicaut
Mining Concepts from Large SAGE Gene Expression Matrices. KDID (2003)