Naftali Kaminski

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 7

Top Topics

Multiple Imputation

Microscopic Images

Differential Expression

Image Registration

Top Venues

PLoS Comput. Biol.

Briefings Bioinform.

Publications

Micha Sam Brickman Raredon, Junchen Yang, Neeharika Kothapalli, Wesley Lewis, Naftali Kaminski, Laura E. Niklason, Yuval Kluger
Comprehensive visualization of cell-cell interactions in single-cell and spatial transcriptomics with NICHES. Bioinform. 39 (1) (2023)
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
Correction: iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects. BMC Bioinform. 24 (1) (2023)
Wenxuan Deng, Bolun Li, Jiawei Wang, Wei Jiang, Xiting Yan, Ningshan Li, Milica Vukmirovic, Naftali Kaminski, Jing Wang, Hongyu Zhao
A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy. Briefings Bioinform. 24 (1) (2023)
Yunqing Liu, Jiayi Zhao, Taylor Sterling Adams, Ningya Wang, Jonas Schupp, Weimiao Wu, John E. McDonough, Geoffrey Lowell Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan
iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects. BMC Bioinform. 24 (1) (2023)
Ye Yuan, Carlos Cosme, Taylor Sterling Adams, Jonas Schupp, Koji Sakamoto, Nikos Xylourgidis, Matthew Ruffalo, Jiachen Li, Naftali Kaminski, Ziv Bar-Joseph
CINS: Cell Interaction Network inference from Single cell expression data. PLoS Comput. Biol. 18 (9) (2022)
Hongyu Li, Biqing Zhu, Zhichao Xu, Taylor Adams, Naftali Kaminski, Hongyu Zhao
A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data. BMC Bioinform. 22 (3) (2021)
Jun Ding, James S. Hagood, Namasivayam Ambalavanan, Naftali Kaminski, Ziv Bar-Joseph
iDREM: Interactive visualization of dynamic regulatory networks. PLoS Comput. Biol. 14 (3) (2018)
Grace T. Huang, Ioannis Tsamardinos, Vineet K. Raghu, Naftali Kaminski, Panayiotis V. Benos
T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes. Pacific Symposium on Biocomputing (2015)
Serena G. Liao, Yan Lin, Dongwan D. Kang, Divay Chandra, Jessica Bon, Naftali Kaminski, Frank C. Sciurba, George C. Tseng
Missing value imputation in high-dimensional phenomic data: imputable or not, and how? BMC Bioinform. 15 (2014)
Suicheng Gu, Xin Meng, Frank C. Sciurba, Hongxia Ma, Joseph K. Leader, Naftali Kaminski, David Gur, Jiantao Pu
Bidirectional elastic image registration using B-spline affine transformation. Comput. Medical Imaging Graph. 38 (4) (2014)
Xingbin Wang, Dongwan D. Kang, Kui Shen, Chi Song, Shuya Lu, Lun-Ching Chang, Serena G. Liao, Zhiguang Huo, Shaowu Tang, Ying Ding, Naftali Kaminski, Etienne Sibille, Yan Lin, Jia Li, George C. Tseng
An R package suite for microarray meta-analysis in quality control, differentially expressed gene analysis and pathway enrichment detection. Bioinform. 28 (19) (2012)
Claudia Coronnello, Ryan J. Hartmaier, Arshi Arora, Luai Huleihel, Kusum V. Pandit, Abha S. Bais, Michael Butterworth, Naftali Kaminski, Gary D. Stormo, Steffi Oesterreich, Panayiotis V. Benos
Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density. PLoS Comput. Biol. 8 (12) (2012)
Zhibao Mi, Kui Shen, Nan Song, Chunrong Cheng, Chi Song, Naftali Kaminski, George C. Tseng
Module-based prediction approach for robust inter-study predictions in microarray data. Bioinform. 26 (20) (2010)
Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph
Alignment and classification of time series gene expression in clinical studies. ISMB (2008)
Naftali Kaminski, Ziv Bar-Joseph
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. J. Comput. Biol. 14 (3) (2007)
Naftali Kaminski, Ziv Bar-Joseph
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies. RECOMB (2006)
Wei Wu, Nilesh Dave, George C. Tseng, Thomas Richards, Eric P. Xing, Naftali Kaminski
Comparison of normalization methods for CodeLink Bioarray data. BMC Bioinform. 6 (2005)
Yoseph Barash, Elinor Dehan, Meir Krupsky, Wilbur Franklin, Marc Geraci, Nir Friedman, Naftali Kaminski
Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays. Bioinform. 20 (6) (2004)