Nae-Chyun Chen

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 10

Top Topics

Multiple Sequence Alignments

Hardware Implementation

Segmentation Algorithm

Top Venues

Publications

Nae-Chyun Chen, Alexey Kolesnikov, Sidharth Goel, Taedong Yun, Pi-Chuan Chang, Andrew Carroll
Improving variant calling using population data and deep learning. BMC Bioinform. 24 (1) (2023)
Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
A Memory-Efficient FM-Index Constructor for Next-Generation Sequencing Applications on FPGAs. CoRR (2021)
Taher Mun, Nae-Chyun Chen, Ben Langmead
LevioSAM: fast lift-over of variant-aware reference alignments. Bioinform. 37 (22) (2021)
Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
A Memory-Efficient FM-Index Constructor for Next-Generation Sequencing Applications on FPGAs. ISCAS (2018)
Yi-Lun Liao, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
Adaptively Banded Smith-Waterman Algorithm for Long Reads and Its Hardware Accelerator. ASAP (2018)
Mao-Jan Lin, Chih-Yu Chang, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
A Hybrid Flow for Multiple Sequence Alignment with a BLASTn Based Pairwise Alignment Processor. ISCAS (2018)
Chun-Shen Liu, Nae-Chyun Chen, Yu-Cheng Li, Yi-Chang Lu
An FPGA-based quality filter for de novo sequence assembly pipeline. APCCAS (2016)
Chih-Yu Chang, Yu-Cheng Li, Nae-Chyun Chen, Xiao-Xuan Huang, Yi-Chang Lu
A special processor design for Nucleotide Basic Local Alignment Search Tool with a new Banded two-hit method. NORCAS (2016)
Yi-Hsiang Chen, Nae-Chyun Chen, Yu-Hsiang Kao, Yu-Cheng Li, Yi-Chang Lu
Queue-based segmentation algorithm for refining depth maps in light field camera applications. GCCE (2016)
Xiao-Xuan Huang, Chun-Hsien Ho, Yu-Cheng Li, Nae-Chyun Chen, Yi-Chang Lu
Step shift: A fast image segmentation algorithm and its hardware implementation for next-generation sequencing fluorescence data. APCCAS (2016)
Nae-Chyun Chen, Tai-Yin Chiu, Yu-Cheng Li, Yu-Chun Chien, Yi-Chang Lu
Power efficient special processor design for burrows-wheeler-transform-based short read sequence alignment. BioCAS (2015)