Markus Rudin

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 16

Top Topics

Functional Connectivity

Magnetic Resonance Imaging

Top Venues

Frontiers Neuroinformatics

Frontiers Comput. Neurosci.

Publications

Joanes Grandjean, David Buehlmann, Michaela Buerge, Hannes Sigrist, Erich Seifritz, Franz X. Vollenweider, Christopher R. Pryce, Markus Rudin
Psilocybin exerts distinct effects on resting state networks associated with serotonin and dopamine in mice. NeuroImage 225 (2021)
Horea-Ioan Ioanas, Markus Marks, Valerio Zerbi, Mehmet Fatih Yanik, Markus Rudin
An optimized registration workflow and standard geometric space for small animal brain imaging. NeuroImage 241 (2021)
Horea-Ioan Ioanas, Markus Marks, Clément M. Garin, Marc Dhenain, Mehmet Fatih Yanik, Markus Rudin
An Automated Open-Source Workflow for Standards-Compliant Integration of Small Animal Magnetic Resonance Imaging Data. Frontiers Neuroinformatics 14 (2020)
Wuwei Ren, Helene Isler, Martin Wolf, Jorge Ripoll, Markus Rudin
Smart Toolkit for Fluorescence Tomography: Simulation, Reconstruction, and Validation. IEEE Trans. Biomed. Eng. 67 (1) (2020)
Marios Georgiadis, Aileen Schroeter, Zirui Gao, Manuel Guizar-Sicairos, Dmitry S. Novikov, Els Fieremans, Markus Rudin
Retrieving neuronal orientations using 3D scanning SAXS and comparison with diffusion MRI. NeuroImage 204 (2020)
Valerio Zerbi, Marija Markicevic, Fabrizio Gasparini, Aileen Schroeter, Markus Rudin, Nicole Wenderoth
Inhibiting mGluR5 activity by AFQ056/Mavoglurant rescues circuit-specific functional connectivity in Fmr1 knockout mice. NeuroImage 191 (2019)
Florian Aymanns, Markus Rudin, Horea-Ioan Ioanas
COSplay: Contrast Optimized Stimulation Player. J. Open Source Softw. 4 (39) (2019)
Praveena Manogaran, Christine Walker-Egger, Marijana Samardzija, Conny Waschkies, Christian Grimm, Markus Rudin, Sven Schippling
Exploring experimental autoimmune optic neuritis using multimodal imaging. NeuroImage 175 (2018)
Robert Becker, Alfred Buck, Volker Commichau, Diogo Di Calafiori, Günther Dissertori, Lubomir Djambazov, Afroditi Eleftheriou, Peter Fischer, Mikiko Ito, Parisa Khateri, Werner Lüstermann, Josep F. Oliver, Christian Ritzer, Michael Ritzert, Ulf Röser, Markus Rudin, Ilaria Sacco, Paola Solevi, Charalampos Tsoumpas, Geoffrey Warnock, Bruno Weber, Matthias T. Wyss, Agnieszka Zagozdzinska-Bochenck
Dual Ring Prototype Electronic System for the Small Animal Fast Insert for MRI. ICECS (2018)
Joanes Grandjean, Maria Giulia Preti, Thomas William Arthur Bolton, Michaela Buerge, Erich Seifritz, Christopher R. Pryce, Dimitri Van De Ville, Markus Rudin
Dynamic reorganization of intrinsic functional networks in the mouse brain. NeuroImage 152 (2017)
Tong Wu, Joanes Grandjean, Simone C. Bosshard, Markus Rudin, David C. Reutens, Tianzi Jiang
Altered regional connectivity reflecting effects of different anaesthesia protocols in the mouse brain. NeuroImage 149 (2017)
Horea-Ioan Ioanas, Bechara John Saab, Markus Rudin
LabbookDB: A Wet-Work-Tracking Database Application Framework. SciPy (2017)
Wuwei Ren, Andreas Elmer, Mark-Aurel Augath, Markus Rudin
FEM-based simulation of a fluorescence tomography experiment using anatomical MR images. Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging (2016)
Joanes Grandjean, Damiano Azzinnari, Aline Seuwen, Hannes Sigrist, Erich Seifritz, Christopher R. Pryce, Markus Rudin
Chronic psychosocial stress in mice leads to changes in brain functional connectivity and metabolite levels comparable to human depression. NeuroImage 142 (2016)
Joanes Grandjean, Rebecca Derungs, Luka Kulic, Tobias Welt, R. Mark Henkelman, Roger M. Nitsch, Markus Rudin
Complex interplay between brain function and structure during cerebral amyloidosis in APP transgenic mouse strains revealed by multi-parametric MRI comparison. NeuroImage 134 (2016)
Qasim Bukhari, David Borsook, Markus Rudin, Lino Becerra
Random Forest Segregation of Drug Responses May Define Regions of Biological Significance. Frontiers Comput. Neurosci. 10 (2016)
Valerio Zerbi, Joanes Grandjean, Markus Rudin, Nicole Wenderoth
Mapping the mouse brain with rs-fMRI: An optimized pipeline for functional network identification. NeuroImage 123 (2015)
Aline Seuwen, Aileen Schroeter, Joanes Grandjean, Markus Rudin
Metabolic changes assessed by MRS accurately reflect brain function during drug-induced epilepsy in mice in contrast to fMRI-based hemodynamic readouts. NeuroImage 120 (2015)
Felix Schlegel, Aileen Schroeter, Markus Rudin
The hemodynamic response to somatosensory stimulation in mice depends on the anesthetic used: Implications on analysis of mouse fMRI data. NeuroImage 116 (2015)
Esther Sydekum, Arko Ghosh, Miriam Gullo, Christof Baltes, Martin E. Schwab, Markus Rudin
Rapid functional reorganization of the forelimb cortical representation after thoracic spinal cord injury in adult rats. NeuroImage 87 (2014)
Joanes Grandjean, Aileen Schroeter, Imene Batata, Markus Rudin
Optimization of anesthesia protocol for resting-state fMRI in mice based on differential effects of anesthetics on functional connectivity patterns. NeuroImage 102 (2014)
Aileen Schroeter, Felix Schlegel, Aline Seuwen, Joanes Grandjean, Markus Rudin
Specificity of stimulus-evoked fMRI responses in the mouse: The influence of systemic physiological changes associated with innocuous stimulation under four different anesthetics. NeuroImage 94 (2014)
Florence Razoux, Christof Baltes, Thomas Mueggler, Aline Seuwen, Holger Russig, Isabelle Mansuy, Markus Rudin
Functional MRI to assess alterations of functional networks in response to pharmacological or genetic manipulations of the serotonergic system in mice. NeuroImage 74 (2013)
Thomas Mueggler, Hartmut Pohl, Christof Baltes, Dieter Riethmacher, Ueli Suter, Markus Rudin
MRI signature in a novel mouse model of genetically induced adult oligodendrocyte cell death. NeuroImage 59 (2) (2012)
Florian Stuker, Christof Baltes, Katerina Dikaiou, D. Vats, Lucio Carrara, Edoardo Charbon, Jorge Ripoll, Markus Rudin
Hybrid Small Animal Imaging System Combining Magnetic Resonance Imaging With Fluorescence Tomography Using Single Photon Avalanche Diode Detectors. IEEE Trans. Medical Imaging 30 (6) (2011)
Esther Sydekum, Christof Baltes, Arko Ghosh, Thomas Mueggler, Martin E. Schwab, Markus Rudin
Functional reorganization in rat somatosensory cortex assessed by fMRI: Elastic image registration based on structural landmarks in fMRI images and application to spinal cord injured rats. NeuroImage 44 (4) (2009)