Mark A. Hallen

Publication Activity (10 Years)

Years Active: 2016-2019
Publications (10 Years): 7

Top Topics

Computational Complexity

Energy Function

Top Venues

J. Comput. Biol.

Publications

Mark A. Hallen, Bruce Randall Donald
Protein design by provable algorithms. Commun. ACM 62 (10) (2019)
Mark A. Hallen, Bruce Randall Donald
Protein Design by Algorithm. CoRR (2018)
Mark A. Hallen, Jeffrey W. Martin, Adegoke Ojewole, Jonathan D. Jou, Anna U. Lowegard, Marcel S. Frenkel, Pablo Gainza, Hunter M. Nisonoff, Aditya Mukund, Siyu Wang, Graham T. Holt, David Zhou, Elizabeth Dowd, Bruce Randall Donald
OSPREY 3.0: Open-source protein redesign for you, with powerful new features. J. Comput. Chem. 39 (30) (2018)
Mark A. Hallen, Bruce Randall Donald
CATS (Coordinates of Atoms by Taylor Series): protein design with backbone flexibility in all locally feasible directions. Bioinform. 33 (14) (2017)
Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald
LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency. J. Comput. Biol. 24 (6) (2017)
Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald
LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency. RECOMB (2016)
Mark A. Hallen, Bruce Randall Donald
comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Protein Design Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. J. Comput. Biol. 23 (5) (2016)