M. Stanley Fujimoto

Publication Activity (10 Years)

Years Active: 2014-2020
Publications (10 Years): 9

Top Topics

Binary Classification

Association Studies

Low False Positive Rate

Top Venues

Publications

M. Stanley Fujimoto, Cole A. Lyman, Mark J. Clement
Kcollections: A Fast and Efficient Library for K-mers. IPDPS Workshops (2020)
Tanner D. Jensen, Kristi A. Bresciano, Emma Dallon, M. Stanley Fujimoto, Cole A. Lyman, Enoch Stewart, Joel Griffitts, Mark J. Clement
The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries. BCB (2018)
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. BIBE (2017)
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. CoRR (2017)
M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Quinn Snell, Seth M. Bybee
The OGCleaner: filtering false-positive homology clusters. Bioinform. 33 (1) (2017)
M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. BIBE (2017)
Paul M. Bodily, M. Stanley Fujimoto, Justin T. Page, Mark J. Clement, Mark T. W. Ebbert, Perry G. Ridge
A novel approach for multi-SNP GWAS and its application in Alzheimer's disease. BMC Bioinform. 17 (S-7) (2016)
M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Seth M. Bybee
Detecting false positive sequence homology: a machine learning approach. BMC Bioinform. 17 (2016)
Paul M. Bodily, M. Stanley Fujimoto, Quinn Snell, Dan Ventura, Mark J. Clement
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction. Bioinform. 32 (1) (2016)
Paul M. Bodily, M. Stanley Fujimoto, Cameron Ortega, Nozomu Okuda, Jared C. Price, Mark J. Clement, Quinn Snell
Heterozygous genome assembly via binary classification of homologous sequence. BMC Bioinform. 16 (S-7) (2015)
M. Stanley Fujimoto, Paul M. Bodily, Nozomu Okuda, Mark J. Clement, Quinn Snell
Effects of error-correction of heterozygous next-generation sequencing data. BMC Bioinform. 15 (S-7) (2014)
Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge
Haplotype-centered mapping for improved alignments and genetic association studies. BCB (2014)