Cole A. Lyman

Publication Activity (10 Years)

Years Active: 2017-2021
Publications (10 Years): 12

Top Topics

Computational Models

Maximum Parsimony

Graph Construction

Top Venues

Publications

Cole A. Lyman, Matthew Morris, Spencer Richman, Hong Bao Cao, Antony Scerri, Chris Cheadle, Gordon Broderick
High Fidelity Modeling of Pulse Dynamics using Logic Networks. BIBM (2021)
Spencer C. Richmanz, Cole A. Lyman, Matthew C. Morris, Hongbao Cao, Anastasia Nesterovay, Anton Yuryevy, Chris Cheadle, Gordon Broderick
Leveraging Drug-Target Interaction Data for the Translation of Computational Models into Clinically Actionable Interventions. BIBM (2021)
Matthew Morris, Spencer Richman, Cole A. Lyman, Jun Qu, Manoj J. Mammen, Sanjay Sethi, Gordon Broderick
Hacking the Immune Response to Infection in Chronic Obstructive Pulmonary Disease. BIBE (2020)
M. Stanley Fujimoto, Cole A. Lyman, Mark J. Clement
Kcollections: A Fast and Efficient Library for K-mers. IPDPS Workshops (2020)
Matthew Morris, Cole A. Lyman, Spencer Richman, Hong Bao Cao, Chris Cheadle, Gordon Broderick
Predicting the Immune Response to Repurposed Drugs in Coronavirus-induced Cytokine Storm. BIBE (2020)
Cole A. Lyman, Mark J. Clement, Travis J. A. Craddock, Mary Fletcher, Nancy G. Klimas, Gordon Broderick
Feedback Regulation of Immune Response to Maximum Exercise in Gulf War Illness. BCB (2019)
Cole A. Lyman, Connor Anderson, Matthew Morris, Umesh K. Nandal, Marianna J. Martindale, Mark J. Clement, Gordon Broderick
When the How Outweighs the What: the Pivotal Importance of Context. BIBM (2019)
Tanner D. Jensen, Kristi A. Bresciano, Emma Dallon, M. Stanley Fujimoto, Cole A. Lyman, Enoch Stewart, Joel Griffitts, Mark J. Clement
The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries. BCB (2018)
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. BIBE (2017)
Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman, Andrew J. Jacobsen, Quinn Snell, Mark J. Clement
Modeling Global and local Codon Bias with Deep Language Models. BIBE (2017)
Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. CoRR (2017)
M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. BIBE (2017)