Linda J. Broadbelt

Publication Activity (10 Years)

Years Active: 2003-2023
Publications (10 Years): 7

Top Topics

Monte Carlo Method

Identify Potential

Metabolic Networks

Bayesian Inference

Top Venues

J. Cheminformatics

PLoS Comput. Biol.

Publications

Kevin M. Shebek, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo
Pickaxe: a Python library for the prediction of novel metabolic reactions. BMC Bioinform. 24 (1) (2023)
Jonathan Strutz, Kevin M. Shebek, Linda J. Broadbelt, Keith E. J. Tyo
MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics. Bioinform. 38 (13) (2022)
Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea
Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development. BMC Bioinform. 20 (1) (2019)
Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo, Yannick J. Bomble
Bayesian inference of metabolic kinetics from genome-scale multiomics data. PLoS Comput. Biol. 15 (11) (2019)
Hanyu Gao, Andreas Waechter, Ivan A. Konstantinov, Steven G. Arturo, Linda J. Broadbelt
Application and comparison of derivative-free optimization algorithms to control and optimize free radical polymerization simulated using the kinetic Monte Carlo method. Comput. Chem. Eng. 108 (2018)
James G. Jeffryes, Ricardo L. Colastani, Mona Elbadawi-Sidhu, Tobias Kind, Thomas D. Niehaus, Linda J. Broadbelt, Andrew D. Hanson, Oliver Fiehn, Keith E. J. Tyo, Christopher S. Henry
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. J. Cheminformatics 7 (2015)
Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt, Keith E. J. Tyo
Efficient searching and annotation of metabolic networks using chemical similarity. Bioinform. 31 (7) (2015)
Di Wu, Qin Wang, Rajeev S. Assary, Linda J. Broadbelt, Goran Krilov
A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate. J. Chem. Inf. Model. 51 (7) (2011)
Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis
In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene. BMC Syst. Biol. 4 (2010)
Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt
Exploring the diversity of complex metabolic networks. Bioinform. 21 (8) (2005)
Ned C. Haubein, Scott A. McMillan, Linda J. Broadbelt
Many-Body Optimization Using an Ab Initio Monte Carlo Method. J. Chem. Inf. Comput. Sci. 43 (1) (2003)
Hsi-Wu Wong, Xuegeng Li, Mark T. Swihart, Linda J. Broadbelt
Encoding of Polycyclic Si-Containing Molecules for Determining Species Uniqueness in Automated Mechanism Generation. J. Chem. Inf. Comput. Sci. 43 (3) (2003)
Scott A. McMillan, Ned C. Haubein, Randall Q. Snurr, Linda J. Broadbelt
Ab Initio Stochastic Optimization of Conformational and Many-Body Degrees of Freedom. J. Chem. Inf. Comput. Sci. 43 (6) (2003)