Lena Simine

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 7

Top Topics

Kolmogorov Complexity

Top Venues

J. Chem. Inf. Model.

J. Comput. Phys.

Publications

Tao Liu, Lena Simine
DeltaGzip: Computing Biopolymer-Ligand Binding Affinity via Kolmogorov Complexity and Lossless Compression. J. Chem. Inf. Model. 64 (14) (2024)
Moksh Jain, Emmanuel Bengio, Alex Hernández-García, Jarrid Rector-Brooks, Bonaventure F. P. Dossou, Chanakya Ajit Ekbote, Jie Fu, Tianyu Zhang, Michael Kilgour, Dinghuai Zhang, Lena Simine, Payel Das, Yoshua Bengio
Biological Sequence Design with GFlowNets. ICML (2022)
Michael Kilgour, Tao Liu, Ilya S. Dementyev, Lena Simine
E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamers with Ligands. J. Open Source Softw. 7 (74) (2022)
Siba Moussa, Michael Kilgour, Clara Jans, Alex Hernández-García, Miroslava Cuperlovic-Culf, Yoshua Bengio, Lena Simine
Diversifying Design of Nucleic Acid Aptamers Using Unsupervised Machine Learning. CoRR (2022)
Moksh Jain, Emmanuel Bengio, Alex Hernández-García, Jarrid Rector-Brooks, Bonaventure F. P. Dossou, Chanakya Ekbote, Jie Fu, Tianyu Zhang, Michael Kilgour, Dinghuai Zhang, Lena Simine, Payel Das, Yoshua Bengio
Biological Sequence Design with GFlowNets. CoRR (2022)
Michael Kilgour, Lena Simine
Inside the black box: A physical basis for the effectiveness of deep generative models of amorphous materials. J. Comput. Phys. 452 (2022)
Michael Kilgour, Tao Liu, Brandon D. Walker, Pengyu Y. Ren, Lena Simine
E2EDNA: Simulation Protocol for DNA Aptamers with Ligands. J. Chem. Inf. Model. 61 (9) (2021)