Khalid Kunji

Publication Activity (10 Years)

Years Active: 2015-2021
Publications (10 Years): 11

Top Topics

Protein Structure Prediction

Community Detection

Gradient Boosting

Top Venues

Briefings Bioinform.

Publications

Raghvendra Mall, Mohamad Saad, Jessica Roelands, Darawan Rinchai, Khalid Kunji, Hossam Almeer, Wouter Hendrickx, Francesco M. Marincola, Michele Ceccarelli, Davide Bedognetti
Network-based identification of key master regulators associated with an immune-silent cancer phenotype. Briefings Bioinform. 22 (6) (2021)
Abdurrahman Elbasir, Raghvendra Mall, Khalid Kunji, Reda Rawi, Zeyaul Islam, Gwo-Yu Chuang, Prasanna R. Kolatkar, Halima Bensmail
BCrystal: an interpretable sequence-based protein crystallization predictor. Bioinform. 36 (5) (2020)
Abdurrahman Elbasir, Balasubramanian Moovarkumudalvan, Khalid Kunji, Prasanna R. Kolatkar, Raghvendra Mall, Halima Bensmail
DeepCrystal: a deep learning framework for sequence-based protein crystallization prediction. Bioinform. 35 (13) (2019)
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Michele Ceccarelli, Halima Bensmail
An unsupervised disease module identification technique in biological networks using novel quality metric based on connectivity, conductance and modularity. F1000Research 7 (2018)
Abdurrahman Elbasir, Balasubramanian Moovarkumudalvan, Khalid Kunji, Prasanna R. Kolatkar, Halima Bensmail, Raghvendra Mall
DeepCrystal: A Deep Learning Framework for Sequence-based Protein Crystallization Prediction. BIBM (2018)
Khalid Kunji, Ehsan Ullah, Alejandro Q. Nato, Ellen M. Wijsman, Mohamad Saad
GIGI-Quick: a fast approach to impute missing genotypes in genome-wide association family data. Bioinform. 34 (9) (2018)
Reda Rawi, Raghvendra Mall, Khalid Kunji, Chen-Hsiang Shen, Peter D. Kwong, Gwo-Yu Chuang
PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine. Bioinform. 34 (7) (2018)
Sameer Khurana, Reda Rawi, Khalid Kunji, Gwo-Yu Chuang, Halima Bensmail, Raghvendra Mall
DeepSol: a deep learning framework for sequence-based protein solubility prediction. Bioinform. 34 (15) (2018)
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Halima Bensmail, Michele Ceccarelli
An adaptive refinement for community detection methods for disease module identification in biological networks using novel metric based on connectivity, conductance & modularity. BIBM (2017)
Raghvendra Mall, Ehsan Ullah, Khalid Kunji, Fulvio D'Angelo, Halima Bensmail, Michele Ceccarelli
Differential Community Detection in Paired Biological Networks. BCB (2017)
Reda Rawi, Raghvendra Mall, Khalid Kunji, Mohammed El Anbari, Michaël Aupetit, Ehsan Ullah, Halima Bensmail
COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator. BMC Bioinform. 17 (2016)
Reda Rawi, Khalid Kunji, Abdelali Haoudi, Halima Bensmail
Residue-residue contact prediction in the HIV-1 envelope glycoprotein complex. BIBM (2015)