José L. Oliver

Publication Activity (10 Years)

Years Active: 1989-2019
Publications (10 Years): 2

Top Topics

Sequenced Genomes

Differential Expression

Hierarchical Clustering

Top Venues

Nucleic Acids Res.

Comput. Biol. Chem.

Publications

Ernesto Aparicio-Puerta, Ricardo Lebrón, Antonio Rueda, Cristina Gómez-Martín, Stavros Giannoukakos, David Jáspez, José María Medina, Andreja Zubkovic, Igor Jurak, Bastian Fromm, Juan A. Marchal, José L. Oliver, Michael Hackenberg
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. Nucleic Acids Res. 47 (Webserver-Issue) (2019)
Ricardo Lebrón, Cristina Gómez-Martín, Pedro Carpena, Pedro Bernaola-Galván, Guillermo Barturen, Michael Hackenberg, José L. Oliver
NGSmethDB 2017: enhanced methylomes and differential methylation. Nucleic Acids Res. 45 (Database-Issue) (2017)
Antonio Rueda, Guillermo Barturen, Ricardo Lebrón, Cristina Gómez-Martín, Ángel M. Alganza, José L. Oliver, Michael Hackenberg
sRNAtoolbox: an integrated collection of small RNA research tools. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Stefanie Geisen, Guillermo Barturen, Ángel M. Alganza, Michael Hackenberg, José L. Oliver
NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes. Nucleic Acids Res. 42 (Database-Issue) (2014)
Francisco Dios, Guillermo Barturen, Ricardo Lebrón, Antonio Rueda, Michael Hackenberg, José L. Oliver
DNA clustering and genome complexity. Comput. Biol. Chem. 53 (2014)
Guillermo Barturen, José L. Oliver, Michael Hackenberg
Best practices for SNV and methylation calling from bisulfite sequencing data. IWBBIO (2013)
Michael Hackenberg, Pedro Carpena, Pedro Bernaola-Galván, Guillermo Barturen, Ángel M. Alganza, José L. Oliver
WordCluster: detecting clusters of DNA words and genomic elements. Algorithms Mol. Biol. 6 (2011)
Michael Hackenberg, Guillermo Barturen, José L. Oliver
NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data. Nucleic Acids Res. 39 (Database-Issue) (2011)
Michael Hackenberg, Christopher Previti, Pedro Luis Luque-Escamilla, Pedro Carpena, José Martínez-Aroza, José L. Oliver
: a distance-based algorithm for CpG-island detection. BMC Bioinform. 7 (2006)
José L. Oliver, Pedro Carpena, Michael Hackenberg, Pedro Bernaola-Galván
IsoFinder: computational prediction of isochores in genome sequences. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Wentian Li, Pedro Bernaola-Galván, Pedro Carpena, José L. Oliver
Isochores merit the prefix 'iso'. Comput. Biol. Chem. 27 (1) (2003)
José L. Oliver, Ramón Román-Roldán, Javier Pérez, Pedro Bernaola-Galván
SEGMENT: identifying compositional domains in DNA sequences. Bioinform. 15 (12) (1999)
Ramón Román-Roldán, Pedro Bernaola-Galván, José L. Oliver
Application of information theory to DNA sequence analysis: A review. Pattern Recognit. 29 (7) (1996)
Ramón Román-Roldán, Pedro Bernaola-Galván, José L. Oliver
Entropic feature for sequence pattern through iterated function systems. Pattern Recognit. Lett. 15 (6) (1994)
José L. Oliver, A. Marin, J. M. Martinez-Zapater
Chloroplast genes transferred to the nuclear plant genome have adjusted to nuclear base composition and codon usage. Nucleic Acids Res. 18 (1) (1990)
José L. Oliver, A. Marin, Juan-Ramón Medina
SDSE: a software package to simulate the evolution of a pair of DNA sequences. Comput. Appl. Biosci. 5 (1) (1989)