John E. Reid

Publication Activity (10 Years)

Years Active: 2009-2020
Publications (10 Years): 7

Top Topics

Gaussian Process

Top Venues

PLoS Comput. Biol.

Publications

Magdalena E. Strauß, Paul D. W. Kirk, John E. Reid, Lorenz Wernisch
GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution. Bioinform. 36 (5) (2020)
Dan Andrei Calian, Peter Roelants, Jacques Calì, Ben Carr, Krishna Dubba, John E. Reid, Dell Zhang
SCRAM: Spatially Coherent Randomized Attention Maps. CoRR (2019)
Alex Hawkins-Hooker, Henry Kenlay, John E. Reid
Projection layers improve deep learning models of regulatory DNA function. F1000Research 8 (2019)
Magdalena E. Strauß, John E. Reid, Lorenz Wernisch
GPseudoRank: a permutation sampler for single cell orderings. Bioinform. 35 (4) (2019)
Christopher A. Penfold, Anastasiya Sybirna, John E. Reid, Yun Huang, Lorenz Wernisch, Zoubin Ghahramani, Murray Grant, M. Azim Surani
Branch-recombinant Gaussian processes for analysis of perturbations in biological time series. Bioinform. 34 (17) (2018)
Evelina Gabasova, John E. Reid, Lorenz Wernisch
Clusternomics: Integrative context-dependent clustering for heterogeneous datasets. PLoS Comput. Biol. 13 (10) (2017)
John E. Reid, Lorenz Wernisch
Pseudotime estimation: deconfounding single cell time series. Bioinform. 32 (19) (2016)
Hashem Koohy, Nigel P. Dyer, John E. Reid, Georgy Koentges, Sascha Ott
An alignment-free model for comparison of regulatory sequences. Bioinform. 26 (19) (2010)
John E. Reid, Sascha Ott, Lorenz Wernisch
Transcriptional programs: Modelling higher order structure in transcriptional control. BMC Bioinform. 10 (2009)