Jochen Singer

Publication Activity (10 Years)

Years Active: 2014-2022
Publications (10 Years): 6

Top Topics

Biological Data

Phylogenetic Trees

Medical Informatics

Metabolic Pathways

Top Venues

BMC Medical Informatics Decis. Mak.

Briefings Bioinform.

Publications

Jack Kuipers, Jochen Singer, Niko Beerenwinkel
Single-cell mutation calling and phylogenetic tree reconstruction with loss and recurrence. Bioinform. 38 (20) (2022)
Jochen Singer, Anja Irmisch, Hans-Joachim Ruscheweyh, Franziska Singer, Nora C. Toussaint, Mitchell P. Levesque, Daniel J. Stekhoven, Niko Beerenwinkel
Bioinformatics for precision oncology. Briefings Bioinform. 20 (3) (2019)
Jochen Singer, Hans-Joachim Ruscheweyh, Ariane L. Hofmann, Thomas Thurnherr, Franziska Singer, Nora C. Toussaint, Charlotte K. Y. Ng, Salvatore Piscuoglio, Christian Beisel, Gerhard Christofori, Reinhard Dummer, Michael N. Hall, Wilhelm Krek, Mitchell P. Levesque, Markus G. Manz, Holger Moch, Andreas Papassotiropoulos, Daniel J. Stekhoven, Peter Wild, Thomas Wüst, Bernd Rinn, Niko Beerenwinkel
NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis. Bioinform. 34 (1) (2018)
Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven
SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics. BMC Medical Informatics Decis. Mak. 18 (1) (2018)
Jochen Singer, Jack Kuipers, Katharina Jahn, Niko Beerenwinkel
SCIΦ: Single-Cell Mutation Identification via Phylogenetic Inference. RECOMB (2018)
Ariane L. Hofmann, Jonas Behr, Jochen Singer, Jack Kuipers, Christian Beisel, Peter Schraml, Holger Moch, Niko Beerenwinkel
Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers. BMC Bioinform. 18 (1) (2017)
Hannes Hauswedell, Jochen Singer, Knut Reinert
Lambda: the local aligner for massive biological data. Bioinform. 30 (17) (2014)