Franziska Singer

Publication Activity (10 Years)

Years Active: 2018-2023
Publications (10 Years): 5

Top Topics

Gene Expression

Dna Copy Number

Top Venues

BMC Medical Informatics Decis. Mak.

Briefings Bioinform.

PLoS Comput. Biol.

Publications

Linda Grob, Anne Bertolini, Matteo Carrara, Ulrike Lischetti, Aizhan Tastanova, Christian Beisel, Mitchell P. Levesque, Daniel J. Stekhoven, Franziska Singer
gExcite: a start-to-end framework for single-cell gene expression, hashing, and antibody analysis. Bioinform. 39 (5) (2023)
Anne Bertolini, Michael Prummer, Mustafa Anil Tuncel, Ulrike Menzel, María Lourdes Rosano-González, Jack Kuipers, Daniel J. Stekhoven, Tumor Profiler consortium, Niko Beerenwinkel, Franziska Singer
scAmpi - A versatile pipeline for single-cell RNA-seq analysis from basics to clinics. PLoS Comput. Biol. 18 (6) (2022)
Jochen Singer, Anja Irmisch, Hans-Joachim Ruscheweyh, Franziska Singer, Nora C. Toussaint, Mitchell P. Levesque, Daniel J. Stekhoven, Niko Beerenwinkel
Bioinformatics for precision oncology. Briefings Bioinform. 20 (3) (2019)
Jochen Singer, Hans-Joachim Ruscheweyh, Ariane L. Hofmann, Thomas Thurnherr, Franziska Singer, Nora C. Toussaint, Charlotte K. Y. Ng, Salvatore Piscuoglio, Christian Beisel, Gerhard Christofori, Reinhard Dummer, Michael N. Hall, Wilhelm Krek, Mitchell P. Levesque, Markus G. Manz, Holger Moch, Andreas Papassotiropoulos, Daniel J. Stekhoven, Peter Wild, Thomas Wüst, Bernd Rinn, Niko Beerenwinkel
NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis. Bioinform. 34 (1) (2018)
Franziska Singer, Anja Irmisch, Nora C. Toussaint, Linda Grob, Jochen Singer, Thomas Thurnherr, Niko Beerenwinkel, Mitchell P. Levesque, Reinhard Dummer, Luca Quagliata, Sacha I. Rothschild, Andreas Wicki, Christian Beisel, Daniel J. Stekhoven
SwissMTB: establishing comprehensive molecular cancer diagnostics in Swiss clinics. BMC Medical Informatics Decis. Mak. 18 (1) (2018)