João F. Matias Rodrigues

Publication Activity (10 Years)

Years Active: 2009-2023
Publications (10 Years): 3

Top Topics

Sequence Analysis

Hierarchical Clustering

Confidence Estimates

Top Venues

Briefings Bioinform.

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Anthony Fullam, Ivica Letunic, Thomas S. B. Schmidt, Quinten R. Ducarmon, Nicolai Karcher, Supriya Khedkar, Michael Kuhn, Martin Larralde, Oleksandr M. Maistrenko, Lukas Malfertheiner, Alessio Milanese, João F. Matias Rodrigues, Claudia Sanchis-López, Christian Schudoma, Damian Szklarczyk, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Christian von Mering, Peer Bork, Daniel R. Mende
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Res. 51 (D1) (2023)
Annika L. Gable, Damian Szklarczyk, David Lyon, João F. Matias Rodrigues, Christian von Mering
Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments. Briefings Bioinform. 23 (5) (2022)
João F. Matias Rodrigues, Thomas S. B. Schmidt, Janko Tackmann, Christian von Mering
MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis. Bioinform. 33 (23) (2017)
Thomas S. B. Schmidt, João F. Matias Rodrigues, Christian von Mering
Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale. PLoS Comput. Biol. 10 (4) (2014)
João F. Matias Rodrigues, Christian von Mering
HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences. Bioinform. 30 (2) (2014)
João F. Matias Rodrigues, Daniel J. Rankin, Valentina Rossetti, Andreas Wagner, Homayoun C. Bagheri
Differences in Cell Division Rates Drive the Evolution of Terminal Differentiation in Microbes. PLoS Comput. Biol. 8 (4) (2012)
João F. Matias Rodrigues, Andreas Wagner
Genotype networks, innovation, and robustness in sulfur metabolism. BMC Syst. Biol. 5 (2011)
Areejit Samal, João F. Matias Rodrigues, Jürgen Jost, Olivier C. Martin, Andreas Wagner
Genotype networks in metabolic reaction spaces. BMC Syst. Biol. 4 (2010)
João F. Matias Rodrigues, Andreas Wagner
Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks. PLoS Comput. Biol. 5 (12) (2009)